Array 1 22578-21145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXO010000021.1 Bacteroides cellulosilyticus strain 1001095IJ_161003_B5 NODE_21_length_120037_cov_24.5224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 22577 47 83.0 30 .....A.....T......C..T....T..........TA.......C CTGTTGGCGTAGATACGAATATGCTCGATT C [22562] 22499 47 95.7 31 ..........AT................................... GCCCGCTCCCCCCGCCTTGCCGCCACGACCG 22421 47 100.0 30 ............................................... GCAAAGGTATCTTGCAGCCATGGCAGGAAA 22344 47 100.0 30 ............................................... GAAGGTGGTAAAATAGATGTCCGTCGTGCC 22267 47 100.0 30 ............................................... AAAGACATAATCCGGATTACCAGAAGGAGG 22190 47 100.0 30 ............................................... CAGAGGTGAAAGCGTAACCTTTCCAGAGGT 22113 47 100.0 29 ............................................... ACCTCTCAGATATATATCTGATGCATCTT 22037 47 100.0 30 ............................................... ATAAGACAATTTATGGTTGTTGGTTACCAT 21960 47 100.0 30 ............................................... GTCCGTGAGGAAATGCAGAAGCTGGAGACT 21883 47 100.0 30 ............................................... AAATACCCCTTGCCACTCTCATAGACATGC 21806 47 100.0 30 ............................................... GAAAATGGTTTGGCCAACTAAGGCGAAAAC 21729 47 100.0 30 ............................................... AGAAGTTCTTTTGAGGCGGAAGAAATATCT 21652 47 100.0 30 ............................................... AGAAACGTAATTATCAGCATCTACTTCTTT 21575 47 100.0 30 ............................................... ATCAGCCGTTTTCTTTGTACCTTTCGTTTC 21498 47 100.0 29 ............................................... TCGAAACAAAAGTGAGAAGAATACTTGAC 21422 47 100.0 30 ............................................... ATGAAGTAGCTGCGCTGCACTCGCCCACCG 21345 47 100.0 30 ............................................... GGGTATCTAAAGAAATAGACTGCTTGATTA 21268 47 100.0 30 ............................................... TTCAATTTTCATGCGTACACCAAGAAGTAT 21191 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 19 47 98.9 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGAAACAGT # Left flank : CCGCCTCAATATCTTCGAATATACTTTCGACGAGCATGATGAGACGGTAGCTTATTCTCTGTCTATTCCTTTCGTCTCTACGTTTGTTTTTGCAGCGGTGATGAAGCACCAGGAGGCTCCGGGTACTACATTCAAGAAGCACATGGCTATTGCCAAGGGTTTGCTGAGTGAAGATGATTACTTACTTCAGGAAATTCTCTTTAATCCGCGCACTCCCTCGCAAGTGGAAAATATTCGTCTGGAGCTGAAGAATTTACTGGAAATTATCAGTACGAAGGATGCGGAAGGGATGAAGCAGTATCTGACGAAGATTAGGGAGAAGATAAAATAGATAGGTGGGATTAAGGGATTGGAGAGAGAAGAGGGTACGGAAAAGGAAGTGGGGCTTCTCTCTTCAATTTGTTAATAAAGAGAGGGGATGATATTTAGGATTGGGGAGCATACTTATTTCTAAAATTATTAAAAATAGTCAAATATAGGCAGGAATGAAATAAAATTCT # Right flank : ACAACCTACATTACAAATTGATTTTCAATTAGTTATAAACCATTTTTGAAATACAAAAACGATGCTGTTTTCAATTAAGAATCCCGCATTTAAGTGGGATTTCTTTTTCTAGAAAAGCTCTAATTGCTGACCGGGAGTATTTATATCCAAAGATTTTTTCCCATAAAACAACTCTATATTTCCAAATTGCTTATCTGTAATACACATAATTCCAACCTGCCCATGCTCCGGCAAGAAAGATTTAACTCTTTTTATATGAACTTCTGCATTCTCACTACTAGCACAATGACGAACATAAATAGAAAACTGAAACATAGTAAAGCCATCTTTCTGCAGATTCTTCTTAAAATCTACATATGCTTTCTTATCCCTCTTTGTTTCAGTAGGCAAATCAAATAATACAAGTACCCACATAATACGATATTCACTAAATCGGTTCATCTCACATTTCCGGATATAATATTCTACGCAATTCACCACTAAAGCATTTATACAAAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGAAACAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 111405-111960 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXO010000013.1 Bacteroides cellulosilyticus strain 1001095IJ_161003_B5 NODE_13_length_145722_cov_25.8971, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 111405 32 100.0 34 ................................ GTCAGATGGCGTATTATCAATATACCAATCGAGG 111471 32 100.0 33 ................................ TTTTGAAAAGTGAAGCAAACAACTTGCAAAGAT 111536 32 100.0 33 ................................ CAAAGTAAGTAAGACGTATAGGCAGGTATCTAT 111601 32 100.0 34 ................................ CCCAGTTTGCAGTCGTTATATTCGCTGTTCCATT 111667 32 100.0 34 ................................ GGAAGAACCTTCCATCTTTAGTCATAACAACATA 111733 32 100.0 34 ................................ CGGTGAAGAGATGGTGCAGGTTCCTTTGCAAACT 111799 32 96.9 34 ............G................... AAAACAGAAAAAGGACTATGCCCGTACACTCTAC 111865 32 96.9 32 ............G................... AAAAAAGAATTGGAAGTAGCCATAGCATCCGG 111929 32 93.8 0 ............G..............A.... | ========== ====== ====== ====== ================================ ================================== ================== 9 32 98.6 34 GTCACTCCTTGTACAGGAGTGTGGATTGAAAC # Left flank : GTGATTTAGATAATTATCCTGTATTTTTAATTTCATAAAAATGTTTATATTAGTGACTTATGATGTAGATACTCAATCAGAAACGGGAGCTAAACGATTGCGTAAAGTGGCTAAAGAATGCTTGAATTATGGACATCGTGTCCAAAATTCAGTCTTTGAATGTGTATTGTCTGAAGCGCAATTTTTGATTTTTAAATCGAAAATCATAAAAATAATAGATTGTGATTTGGATAGTATTCGTTTTTATTTCTTGGGTAAGTATTGGAACAATAGAATTGAGTGTTTAGGGCGTGAAACTGCTATTGATGTAAATTCTGAACTAATAATTTAGTCTATTGCGAATGTGAAGCATTGCATATTTTGTGTATCTTTCGCAAGTGCTAATAATCAGTACCTAAGTCTTTTTTTACTTAAAAATGTGTCCTTTATAAAAATGACTTTTCTATATTCGCAAAAATCTCTTTAAGCATATAAGAATATCAATGCTTTAAAGTGAAAGA # Right flank : CAAGGATATCAGAAAGACCAACTTATATTATTAACATCCTCTTTATACGAGGGTGTGGATTGCAATGATCTTTACATCCAAAACGGTGATATCCGTTCACTTTTCTGTCTCTTTATCCTAATGACGTTGCAAAATTATAGATTTTTTTTTTCACGTTACTGTTTGAACGTCTTTTTTGATGCATACTGTCTCCATTGAGTTCAAAACGCACACTTGTCTACCGGATTGCTTTTAAGCAATTCAAGCCCTTGCAGGGCACTTTCGGCGGTGAGGGTTTGGTCTCTTTTGCTGAAGATACGGTAAATGAGTTCCTGTAAGTCCTTGTTGTCGTCAATGAACAAGATACATGGTTTCTCTTCCTGTGCCGATATGTCTGTTTCTCTGTCTTGAACAGGCAAGGGAGAGGACTCTACTATTTCCTGTTCACTATATACCTCTCTGTCAATTGGTTTTTCTACTGTAAACAGTGATCCTTTACCCAGTTCGCTGCTTACCTTGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTGTACAGGAGTGTGGATTGAAAC # Alternate repeat : GTCACTCCTTGTGCAGGAGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //