Array 1 3684416-3684872 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050447.1 Serratia marcescens strain SER00094 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3684416 29 100.0 32 ............................. TACGGCAGTCTAAACCCTATGATGCGGACCGA 3684477 29 100.0 32 ............................. ATGAGCAGGGCGCTTTGTTTTGTCCTCATGCG 3684538 29 100.0 32 ............................. CATTAACCCCTCACTATTGGCAGAACGCCTAA 3684599 29 100.0 32 ............................. AATCCAAGCAGGCCAATGTGCAATGACGATGA 3684660 29 100.0 33 ............................. CAATGCTAATAGTGTGGCCAGCATGTACGACAC 3684722 29 100.0 32 ............................. TCGAATGAATTGGCCATTACTTGCCCGCCTTA 3684783 29 100.0 32 ............................. GCCAAAGATGCCGAGGGCATGAAACGTAAAGA 3684844 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : AGCTGGTGACCGAGTGCCTGCGCAGCGTCGAGATGATCTACCTGACGCTGGCGTTCATCACGACGCCGGTCTTCTACCTGTCCGGCACCATCTGGCCGCTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCCGGCGTCAACCAGATGGGGCTGTCGCTGAATGAAGTGTGGGGCGACGTGGTGATGATGCTGGTGCTCGGCGTGGTCTACACCCTACTGGGCTTCGGCGTCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAACGGCGGGTGTAGTGGGTGTATGTTATTGTTTTAAAATAAGAACCTGGTGGTTTGGCTTTATTGTAATGAATGATTTTTTTATTTCATAAATTTCAAATGGTTATATAGTCTTCCGGATACTTAAATCGCAGTGAAATTTTGTAATGTTTAAAAGTATATTTAATTCAATTAGATATATTGAGA # Right flank : GCATGTTCACGATTTCTGGTTGCGGGGAATGGCGAAAGGTTCGTTCGGAACGGCGTGCATGCCGCAAACAATGGGAATGCCGGAGTACCCGGATTGTCGGGTGCCACGGGATCTCACCCGAGAGGGGGGGCTGCGCGGGCTTGAGAAGCCCTGCATCAGTACATCTATGAGGTGGGGGCTTGAGGACTATTAAAGGTATGGTATTATCTAATAACCGTGATAATCAGCAGAGGGTCAATCCATGAACGTCGTTCACGACCATCCAGGGGTCTCTACTCTTGTTGGAACCCCAAAAGAAATACAGGACAAGCTCCGGAAGTCGCATGCCGACAAGGTGATGGTGCTCACTTTCGAGCACATGAATGCCCATGTGCTGAAGACCTTGGCCGAGAACATGTCAAACGTTGCCTCGTCGATGTTCGAAGTACTGCTGACACGGCAGGATCGCGAAGTCGTGGAGCTTCTGGCTGACGCGCTCGTCCCGCGAAAGCCGGCTTCAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3698593-3699232 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050447.1 Serratia marcescens strain SER00094 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3698593 29 100.0 32 ............................. AACTCAACAAAGTCCTGAGCATAATCCTGGTA 3698654 29 100.0 32 ............................. GCGTACCTGTTGCCTGAAAATTTCTACATCAC 3698715 29 100.0 32 ............................. CCATTGTTCATAGTGTCCAACTTCATCGTCGG 3698776 29 100.0 32 ............................. ATAACCCCGTAATCAATGCCAACTGCAGGCGC 3698837 29 100.0 32 ............................. TACCCGCAGGCATTCTGTCCACTGATCTACTG 3698898 29 100.0 32 ............................. GTGTCCGTGGTCTGGGTTAAACAGGCTGCCGG 3698959 29 100.0 32 ............................. CGCCTGCCGGTTCCATTGTTATTGTTGACGCA 3699020 29 100.0 32 ............................. GGCCGATGAGAGATAACCACCGGTAAGATGAG 3699081 29 96.6 32 .............T............... CGATTATTACCACCGCTGGGGCGGCCAAGATT 3699142 29 96.6 32 .............G............... CAGTCAGGCATACGGGTCATGGCTTCCATCAC 3699203 29 86.2 0 .........................TGAC | C [3699224] ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAGGAGGTTCTGGCCGCGGGGGGAATCGAACTCCCTAAACCTTTTGAAGATGCGCAGCCCCCTGCGATTCCTGAACCTGTTTCGTTAGGTGATGCGGGCCACAGGAGTCGGAACTGATGGGAATGCTGGTTGTCGTGACGGAAAACATTCCTCCACGGCTGCGAGGCCGGTTGGCTGTGTGGCTATTGGAGGTGCGGGCCGGGGTCTATGTCGGTAATACCTCGCGTAAAGTCCGTGAAATGATCTGGCATCAGGTTACCGCCTTAGCGGGGGAAGGTAATGCCGTTATGGCTTGGGCGATGAATAACGAGTCAGGTTTTGATTTTCAAACATGGGGAGAAAACCGGCGTGAACCGGTAGATCTCGATGGGCTAAGGTTGGTCTCTTTCCTCCCTATTGAAAATCAGTAAGTTATCGATCTTTAAAAACATGGAAAAGTTGGTGGAATTTTAGAGTCTTAAAAAGTTCTATTATAACAAACAGTTATGCCTAGA # Right flank : CTTTTAGTGAACGGTATGTCAGAACAATCACTCATCAGTGGCTAAATACCGGCAGTACTTAAAAATAAAACGCTCTCATATCACCCCACCAACTCCAACCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGATCGGTCAAGGCCAGCGGCTGCTCGCCATGCTCGTTGGCGCGGAATGCGTCGACTTGCGCCAGCGTCTCGGCGCCCTGCGGCGACAGCCGCACGATGTCCACCAGCCCCTGCATGCTTGGCAGCTCGTTGCCGAGGTTGTAGCAGTAACCGCTCATGGTCTGGATGCCGTTGAGTACGAACACCTGCTGCTGTTCCTGGGAGCGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCACTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAATAGGCCAGCGGCAGATGGCCGTAGCTCAGCACCTCCACCTCGAAGTCGTGGCGGAAGCCCAGCTCGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3702637-3704010 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050447.1 Serratia marcescens strain SER00094 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3702637 29 100.0 32 ............................. GTCATCGAGTGGATGAACTTTGGGCTTGGTCG 3702698 29 100.0 32 ............................. CGGTGCGGATATCTGCAGCTATCAATCAGCTG 3702759 29 100.0 32 ............................. CGCCCATTCAGCATACCGATCGTGTAGTTGAA 3702820 29 100.0 32 ............................. GATTCAGCATTTCGCAACGCCTGGACGGAATT 3702881 29 100.0 32 ............................. AGAGCTGGGCCGCCAATCCCTGGGTGTGGGTA 3702942 29 100.0 32 ............................. CCATTATCTATTAGCCATTGACGAGAGTCGTG 3703003 29 100.0 32 ............................. CGCGATCGCGGAGGTCAACGCTGAATTGTTCA 3703064 29 100.0 32 ............................. CATCTTTGTGACTGCCAGCTTATCAGCGCTAC 3703125 29 100.0 32 ............................. CGCGGCTCCCGCCGCCATCGAGGTGGCCGATC 3703186 29 100.0 32 ............................. ATTTTGCGGAGATGGAGTCCGCGTATATAGAA 3703247 29 100.0 32 ............................. GCAATCGCCACATGTTCGGCGGTTACAAGGCT 3703308 29 100.0 32 ............................. ACGGTTAACGGCAGTGTTGCCGGTGGTTTTTA 3703369 29 100.0 32 ............................. TCCGGGCAGTTGCCGACGGCAATGAGCTGGCC 3703430 29 100.0 32 ............................. TCCGGGCAGTTGCCGACGGCAATGAGCTGGCC 3703491 29 96.6 32 .......T..................... GTGCCGAGCAGTTGATCGACCAGGCCAGCGTC 3703552 29 100.0 33 ............................. GAAATGAATTTGGAAGACCTGGCGCGCCAGTTG 3703614 29 100.0 33 ............................. GGTTTATCAGCGATGCGTATGCGGATTACAACC 3703676 29 100.0 32 ............................. AATACTGTTTCCGCGATCGTTGGAGCCAACGT 3703737 29 100.0 32 ............................. TTCATCCATAGCTGCTCGGTGCGCGGGCCGCC 3703798 29 100.0 33 ............................. CACATGATCGACGAGGCCCGGCTTTATTCCTAC 3703860 29 96.6 32 .............C............... CCGATAATGATGCGGTCGAGCGCCTGACGTTT 3703921 29 89.7 32 ............TC.....A......... CAGCACGTCACCCGACGAGCTGGAGCAGGCGC 3703982 29 69.0 0 ........T.T.TA.A......GG...AA | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : ACGCCGCGTTCAGCCCGGTAGACGTGGCCGGCGAAGACCGCCAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCCAGGGGCTGGCTGAAAAGTTGGTGTACGAAGGCCTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGAAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTCTAACTTGTTGATAATTAGTTTTAATTTGGTGGGAAAGGATTTCACCAAAGTGCTTTTTAAAATTTACTTATAAATCAAATGGTTGTGTTTTTACGTAAGACGAGAATATTTGGTGGAATTTGAGGTCTTTAAAAATTCATTTTAATTCAACCATATATTCTAAGA # Right flank : ATTGAGTGCTCGCAATCACATAGGCAGCATTTGAAATGCAGGGGGAAAAATCACGTAATGAAACCTATTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAATGTCAGTTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGGTGCTGTGCCAGGCGGCGCCCCACGTCGGTAGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGGTGCCAGGGAGTGGGGGAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCGTCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAAACGATGCCGTACAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //