Array 1 1446423-1445661 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134203.1 Streptococcus lutetiensis strain NCTC11436 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1446422 36 100.0 30 .................................... GTTATGCCTGCCAAAAAATGTCCTCCTTTC 1446356 36 100.0 30 .................................... TTCAAGATTTAGGTTCGAGTGATATAGCCG 1446290 36 100.0 30 .................................... TGCTAGTCAGAAAACGGCCACACTTGAAAC 1446224 36 100.0 30 .................................... CGCAAGCACGAATACCAGAACCGATTAGCC 1446158 36 100.0 30 .................................... TATTTCTTCGCTGATATGTTTAACCTCACT 1446092 36 100.0 30 .................................... TGCCTTACCTACGTTATGGACATACTAACT 1446026 36 100.0 30 .................................... AAAAACAAGTTGACAATTTATCAAATGTCA 1445960 36 100.0 30 .................................... GTGAAATTGATACCATTGACCCGTTAAACA 1445894 36 100.0 30 .................................... AAAATGGTTATCTTTCAGAACCATCTGCTC 1445828 36 100.0 30 .................................... AGCAGTGGCTAAATACTTATCAAGCATATC 1445762 36 100.0 30 .................................... AAATATACGCTATAATATACTTGTAAGATA 1445696 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGGTTTGGGGAATAAAATAATTAAGTATGGAATTATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TGTGGCTACTAAATATGAATACACCAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTAATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAGCGCTTTCTGCAAAACTTGTAAAATGATTTGTGGTAGCTGGTTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAACTACACAGCTAAAGATGGTGAAATTTACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1448255-1447025 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134203.1 Streptococcus lutetiensis strain NCTC11436 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1448254 36 100.0 30 .................................... TATATCCTGTTGGTATTGTTTCAACCATTT 1448188 36 100.0 30 .................................... GAAGTCTTAATGAGCCATTTCCCATGGATC 1448122 36 100.0 30 .................................... TTGAGCTTGGTAAGCAACCGTCTGACAATC 1448056 36 100.0 30 .................................... TTGCCCACCTTCATATCTAGCGAGCCATAT 1447990 36 100.0 30 .................................... GATGCTGCACATTTCAGCAAATGACGCTAA 1447924 36 100.0 30 .................................... AGGACGAAAAAAATCGTGTGGTTGCCTTTA 1447858 36 100.0 30 .................................... CACTACCAACTAATTGCGTTAATCGTTTGA 1447792 36 100.0 31 .................................... CCAGAAATCGTACGACTACTAAACATATCAT 1447725 36 100.0 30 .................................... ACTTGCAAATGCAAGTACTTATCCAAATGA 1447659 36 100.0 30 .................................... TCAAAATTATCTAATTATCCGTGGATAACA 1447593 36 100.0 30 .................................... GAACTGTATTATAGTATACCAGACCATCTT 1447527 36 100.0 30 .................................... TAGCTCGACGGTCAATGTACAAGCACGTCT 1447461 36 100.0 30 .................................... TTAGCAACGACCAAATTGAAAAAGTGACTA 1447395 36 100.0 30 .................................... GGAAAAATAATAGCTCTGACGGAACTACGC 1447329 36 100.0 30 .................................... ATATTGATTTGTTTGTTACTCAAATTGGTA 1447263 36 100.0 30 .................................... CTAAGTTCACACAAACAGTATCGAGCATTC 1447197 36 100.0 30 .................................... AATTCACTGAATAGAATATCATACAGTCCG 1447131 36 100.0 29 .................................... CTTAATCTAATAAACTATAAAATTATCTA 1447066 36 88.9 0 ....................T...AAA......... | T,AAT,C,A [1447030,1447032,1447037,1447039] ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGAAACTGAGGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGTTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACTGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTAGCAGAATGGTTAGTCAGATTAGCTGACTGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGATTTGGAGAAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAACTAACATTATGGAGCTGTTCGAGACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : TGTAGTAAAAATTACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //