Array 1 3609-218 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAID010000015.1 Legionella nagasakiensis strain JCM 15315, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3608 28 100.0 33 ............................ CCACGTTCTAAGCTATTCTTTAAATTTGTAGAG 3547 28 100.0 32 ............................ TCAAAAGATAGATTCTACTGATTTAATTATGT 3487 28 100.0 32 ............................ AGAAAGAAGGAAAAAAGAGCAGAGGAGCATCT 3427 28 100.0 32 ............................ CGTAGCTGTTAAATCGTTTGAAATGGGACGAG 3367 28 100.0 32 ............................ TATGAAGCCTGTAATGCCTCGTCTTATATAAT 3307 28 100.0 32 ............................ ATTGAGACACCTAGTAATAACTGCTACATGCC 3247 28 100.0 32 ............................ ATTTAACAGGTCGTTTCAAAACCTTAAGGAAA 3187 28 100.0 32 ............................ TTTTTGATGCTAAATTATAATGTTCATTTAAT 3127 28 100.0 32 ............................ ATGCAATGTCCTAAATTGTTTTTCTATTTTAA 3067 28 100.0 32 ............................ TAACCCAGATCGTTCACCGCAGTTCTGGGATA 3007 28 100.0 32 ............................ AAATAAAGAAAAACCCCGTGACGGGGCTTATA 2947 28 100.0 33 ............................ CTGAAAAATTTTAATGAATCGTGGTATCACCAT 2886 28 100.0 32 ............................ TGATTCCAGTTCTTCAAATGTCACTTCATCGG 2826 28 100.0 32 ............................ AAATAAAGAAAAACCCCGTGACGGGGCTTATA 2766 28 100.0 32 ............................ TAGAGAGACCAATTGGCCGGTTGTTGGGTTAT 2706 28 100.0 32 ............................ ATCCATCCCCCTGTTCGTCATCGCTTAACGAC 2646 28 100.0 32 ............................ TCAAGTCGCTCAGTCTCAAGTCGCGCAATCTC 2586 28 100.0 32 ............................ CTGCTGCTTTTGATACAGGGGCTATTGTTTCA 2526 28 100.0 32 ............................ GTTACTGCACAGTCAACGTTCTCACACTGTGG 2466 28 100.0 32 ............................ TCAAAAGATTAAATGCAATCCTCATCATTTCA 2406 28 100.0 32 ............................ TAATGCACCAAAAATCCAGTGGGAAAATGATG 2346 28 100.0 32 ............................ ATCGTCAGCAGCTCCAGGCAATGCCAAAGTAT 2286 28 100.0 32 ............................ AATCATGCAGTACGGCAGGCGCTATGCAGTCG 2226 28 100.0 32 ............................ TTGGTATTGGAGCCAGACTATTTTTATGAGCG 2166 28 100.0 32 ............................ ACGCTGGAAACGACAAGGCTGGATTCCTCAAG 2106 28 100.0 32 ............................ ATCATCAATCAGACCTGCGCCAATTAGAACAC 2046 28 100.0 32 ............................ GCAAAAGAACGATTGAACTTTAAACGCACGAT 1986 28 100.0 32 ............................ ACGCAGGCGCGAGATAAACGACTCGAGAATAT 1926 28 100.0 32 ............................ CAAGGAAGGTAAAGCCATCGCTGCTGATTTTG 1866 28 100.0 33 ............................ ATGACCGCCACTTGTTCGGGCGTTGGCGATTGC 1805 28 100.0 32 ............................ TATGAAGACGAACACGCCGATGATTGGAAATA 1745 28 100.0 32 ............................ GTACTGTTTCGGTAAGAGCTTCGACGCCAGCC 1685 28 100.0 32 ............................ AAACAACCTAAACCAAATCCCACGTTTGAAAT 1625 28 100.0 32 ............................ AATGAGCAATACCATGCATCTTCTGCTGTTTC 1565 28 100.0 32 ............................ AATTACAAGGGATATTTGTCGGATTTGACGTT 1505 28 100.0 32 ............................ CGACTAACAAACCTACCTTTATCATCACGAAC 1445 28 100.0 32 ............................ CTACGAAAAAAGCTTGATGGCGTTAGTCGAGC 1385 28 100.0 32 ............................ AGCAGCCGGTTGATATTAGTACGCAGGCTATT 1325 28 100.0 32 ............................ TTGTTTCTTTTATGATGAGCACAGGCCAGCAG 1265 28 100.0 32 ............................ CAATGCGGACGGGGATTGGAAGCAACAATTGC 1205 28 100.0 32 ............................ ACGAAAACGCTTCGCCTTGGCCGTTTGTATCC 1145 28 100.0 32 ............................ TTGGTAAAGCAGGCTGTCGATTCTTATTATAA 1085 28 100.0 32 ............................ TTATAAAAAACCAACTATCGGCTTATTTGGCA 1025 28 100.0 32 ............................ TAAGAAAGAGTACGACTTAGGTGCTGACGTAA 965 28 100.0 32 ............................ TTACATCGTTTACAAGTAATCTTTAATGTGTC 905 28 100.0 32 ............................ TTTATTGTCTCAGTTGCCAGGTGCAATAGGCG 845 28 100.0 32 ............................ ATATTAGACGCTAAATAATACCGTTCGGGAAT 785 28 100.0 32 ............................ TACCGCTTCTATGGCGATGGCGTTACCCCCAT 725 28 100.0 32 ............................ GCACCCCCAGAAGCTTGCCGGTGCTTTTGTCA 665 28 100.0 32 ............................ GGACATTTGTGCACTGTTGATTCCGGCAGACG 605 28 100.0 32 ............................ TATAGGCGTAAGATACGACACTTACAAGATAG 545 28 100.0 32 ............................ TATATCGTTTCATAGCAGCACTATCTCGGTTA 485 28 100.0 32 ............................ GCAGCCGAGGCAGACGCACAAACTACGCCAGC 425 28 100.0 32 ............................ TAAAGATTTTGAAGCACCACCTTATCACTATA 365 28 100.0 32 ............................ TACTATTATAGGAACTAATTTAAAATTTGATT 305 28 100.0 32 ............................ TGGCCCTCATCTCAGATTTAGTCGTGATAGGC 245 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 57 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTGTCACGTAAACAACCAACTATGAGTCAATCAAAATTGAGGCGGTTAATTAAACGTAATTCTTTGATGGAAGAGGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGGTAATCCATATATTGAACTTGTGAGCGGATCAAACGGGCAAAGACACCGACGGTATATTGAGTTTGGTGACTTGCTCGATCAGCCAATTTCTGGAGAATTTGATCAGTTTGGACTTTCCAAAACAGCTACTGTTCCTTGGTTTGATTGACATAAGAATATGACAAACCAGTGTATTCGATATTCTTAAGATGCTCTGTCTGGCATGAATAAGAAAATAGTTCAGGCTAGACCGTTTTCTACACTCTAATAACCAATAATTTCTGTTCTTTAAAAATTTATTTTAAAATCAAATGGTTGAAGTATGGTGGAAAATCATTGGGTAAATTGGTATTTTTCTGCTAACTTTTTGTTGTAACTATTTTTTATGCTTTATATTTTGAG # Right flank : AAACATTGCTTTTATAACATCGGTATTCAGGCCGTTGACGTGGTCTAATTGATTTGGACAGCCCAGTTAAGAGATAATTTGCTTAATTGGAGTTCAATATGTCTACGAGAAGAAAATATACAAAAGAATTTAAACTGGATGCAATTAGTCTGGTCACTGAACAAGGATATACCTGTTCTGAAGCAGCGAGGAGCCTGGGTATTCATTCAACTATTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //