Array 1 126404-126817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUS010000005.1 Listeria seeligeri strain FSL L7-1047 NODE_5_length_146098_cov_28.899268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 126404 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 126467 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 126531 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 126597 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGCAATTT 126660 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 126724 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 126789 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.5 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGTGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGTATTCCTTTGTGGGAGAATAGGTTTGGTGGATTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 133044-134881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUS010000005.1 Listeria seeligeri strain FSL L7-1047 NODE_5_length_146098_cov_28.899268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 133044 29 100.0 36 ............................. GTACATTAAACGGTGAGGCTGATAAGTCGTATCGTC 133109 29 100.0 38 ............................. TCGCAATTCTGTCTACCATTTGACCACCTGCTGCTACC 133176 29 100.0 34 ............................. TAAAGTGCCGCCGCTGTTAGGTCGTGAAGTTTTG 133239 29 100.0 35 ............................. ACCGAAAAGCGGAATATTATCTTCATCCGCTTTTT 133303 29 100.0 36 ............................. TTCCTTAACGAAGCGTATCTAGTAAAATTTACAAAC 133368 29 100.0 34 ............................. ATAAATCAACTAACGCCGATCGCAATTCATTAAT 133431 29 100.0 35 ............................. ACGATTTTTGTTTTACAAATTGCGAGGCGAAATCC 133495 29 100.0 36 ............................. TTCGGTGTCATCATGATGTCGAAACGCAAGGCTTTG 133560 29 100.0 37 ............................. ATGCTTTCCCGGCTTCAACTGTTTTCTTTCCAACCCA 133626 29 100.0 34 ............................. TCCCCTGTTTGTAACTTTAAAAATCCGGGATGAG 133689 29 100.0 35 ............................. ATGTCTTTATTGTCTTTCTCTGTCAGTTCCCAATA 133753 29 100.0 35 ............................. CTTGTTCAAAGAATGCCGGTACACCATTTTTAAAC 133817 29 100.0 34 ............................. GACACCCTGTTTCTCACAAAAAAAGAAGCGCAGC 133880 29 100.0 36 ............................. TAGGGCTGTTATAAATAGTGCCAGCGAGGGCATTAA 133945 29 100.0 36 ............................. AATAAAGTTGCAGGTCGTAGGTACTTACTCATGTTA 134010 29 100.0 37 ............................. GTGATTATAAACGAAATGCGGATAACACTCGTAATAA 134076 29 100.0 35 ............................. ATTTTTTTGGTTGTTATAATATATTTTTTAAAATC 134140 29 100.0 35 ............................. AAACTTAATCTGGATCTAAAAAATGAGATTCCTGA 134204 29 100.0 37 ............................. GCAAATCTAATTGCTCAAATCCTTCTTGTGATTTTTC 134270 29 96.6 37 .....................G....... TAGGCATCACCCCCTAAATGGGATTTAGCCACCATCT 134336 29 100.0 39 ............................. ATAAAAATAAATAATTTTGCTAATGCGCGCTTGGTTTCA 134404 29 100.0 35 ............................. CTGTGTAGCTTCTTAAGAACAGTAGCCATGTGAGA 134468 29 100.0 36 ............................. TGACTTCTAAAAAAGTATGGACAATGGAACGTGCTT 134533 29 100.0 34 ............................. ACTTTTTAGGTTGCTCAACTAAATAATTAATTAA 134596 29 100.0 34 ............................. AGATTAAGTAGTTCCTGTATATGTTCTTTTGAAT 134659 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 134723 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 134788 29 93.1 35 ........................C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 134852 29 86.2 0 ........C....C..A...........G | T [134878] ========== ====== ====== ====== ============================= ======================================= ================== 29 29 99.1 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TAAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGTTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGAGAGTAGGGATGGAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTTTTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAATAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTGTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGATGACAAAATGAGATTTAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATTGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 144667-146044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUS010000005.1 Listeria seeligeri strain FSL L7-1047 NODE_5_length_146098_cov_28.899268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 144667 29 100.0 34 ............................. GAATTTAGCTTGTTGTATCTTCGCTTGTTTTTCC 144730 29 100.0 37 ............................. TTATATTCAGATTCTTCGTTTTTCACCGTAACTTGGC 144796 29 100.0 35 ............................. AACCGAGTGGGTAGATATTCGTACAAAGTTATGGC 144860 29 100.0 35 ............................. CAGTTATAAATAGTAAGTTAGAGCTTACTAAAACC 144924 29 100.0 36 ............................. TTCCCATTGGTGCAATATATTGTTCGACAGCATTTT 144989 29 100.0 36 ............................. GAATAACGAAGATTATGATGTATTGTGGAGTTCACT 145054 29 100.0 36 ............................. ACGACAAACAAGGAACAGCGAATTATTTGCGATAGT 145119 29 100.0 34 ............................. CCAGCTTGCCTTTTCAACCAGTTTTCCGTTTTCA 145182 29 100.0 35 ............................. TTCAACGCCAGCCCAAGCCGTTTCAAAGTTTGCTG 145246 29 100.0 34 ............................. ATTAAATGGTACGGCGGTGCCGACTTGGCAAAAC 145309 29 100.0 35 ............................. CACTAAAAGGTGGATTCTTAGTCGCACTTAATGCA 145373 29 100.0 34 ............................. TGAGTCAACTATTAGGGAAGTAAATCCGGAATTG 145436 29 100.0 36 ............................. AGTGTTCAGTTATTTCTTCATACATAGCTAGTAACG 145501 29 100.0 34 ............................. GCATTATGCAGTTAGCCATTCTAGTAATTTTGTT 145564 29 100.0 37 ............................. AAATATGCGTGAAACGTATGAAGCTATGATTAATCGA 145630 29 100.0 37 ............................. ACCTGCTTGCAAAAGCTGATAAATTTTGACAGTTGAC 145696 29 100.0 35 ............................. AAGCAAAAGACAATTTGGAGAATTTAGTCTTAAAA 145760 29 100.0 36 ............................. AAACAAAAAAGCATGATCGCAAATGCGGATACTAGT 145825 29 100.0 35 ............................. ACTTGTATCTGGGCGTTGTTCGGGATTTAACTGAA 145889 29 100.0 35 ............................. ATTGGAACTGGTGGTATTGTAGCGGAGAATTACGA 145953 29 100.0 34 ............................. ATATTGTATTTTCATGTTTTGTCATTTGTTTAAC 146016 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 22 29 100.0 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGATGGGGCAACGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGGTATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTTAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CTTGTTATTTTGTTTACCAAATCTTTATTGTTAGCATGTTTTAATTACTTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 61928-61573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUS010000018.1 Listeria seeligeri strain FSL L7-1047 NODE_18_length_61948_cov_35.224968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 61927 29 100.0 34 ............................. AGCAAAGAAATGATGGAATTAAAAATTCATCCTT 61864 29 100.0 38 ............................. ACACTTCATTTACTTCTGCCTGACTAACGCGAGCTGCG 61797 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 61732 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 61667 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 61601 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 92.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GTAAGGGACTACTTGTATCT # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTCATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGATTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //