Array 1 18501-17190 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKS01000082.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal678 sal678_contig_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18500 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 18439 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 18378 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 18317 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 18256 29 96.6 32 .............T............... TGCTAACTGGTTCAGGCCAGCAATAACGTTGG 18195 29 96.6 32 .............T............... CGCTGCCGGCTTAAATACGTGACGCATAGTAG 18134 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 18073 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 18012 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 17951 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 17890 29 100.0 32 ............................. GCGGCTATGTCGTAACATTCCCGGACATCCCC 17829 29 100.0 32 ............................. GTCTTTTAACGTAGCCTCCAACTGACTGCTTG 17768 29 96.6 32 ............................A AACTGCTGAACAAACGCAGCCGTAATTCTGTC 17707 29 100.0 32 ............................. GCCCGTATATGGATTTAACTTTATCAGCGGCT 17646 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 17585 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 17524 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 17463 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 17402 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 17341 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 17280 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 17219 29 100.0 0 ............................. | A [17192] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCTCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28552-26633 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKS01000082.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal678 sal678_contig_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28551 29 100.0 32 ............................. GCGATCGGTCCCCGTACTGGCGGGTAAATCAG 28490 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 28429 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 28368 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 28307 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 28246 29 100.0 32 ............................. ATCGACGTGTACAAAAATGATGCAATTCGTTT 28185 29 96.6 32 ............................C GTAGAAGACGACGTAACAAACCGCATTTACAA 28124 29 100.0 32 ............................. CTCCGGCGCAACCACTTGCTTAACGTCACTTG 28063 29 100.0 32 ............................. CTATCAATGTGATTGCGTTGTCCTTACCGGCG 28002 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 27941 29 100.0 32 ............................. CTTAAAAGAGATGTGCTCTCTAATGGGGTTAT 27880 29 100.0 32 ............................. GGTTCAGCGTAGCCCGACCGCTGTAAGCGGTC 27819 29 100.0 32 ............................. CTATTAGCGCGGCTGGCACCCGTGCCGCGCTC 27758 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 27697 29 100.0 32 ............................. ATCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 27636 29 100.0 32 ............................. TTTTCAGGTCTGCAGCGGAAGTCAGGGGAGAG 27575 29 100.0 32 ............................. ACCAAAGGGGTTTTTCCACGTATCGCCGCTGC 27514 29 100.0 32 ............................. CGATATGACTTTTCCTGTATATCTAATAAAGA 27453 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 27392 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 27331 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 27270 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 27209 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 27148 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 27087 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 27026 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 26965 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 26904 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 26843 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 26782 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 26721 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 26660 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //