Array 1 70258-70006 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEE01000027.1 Pseudoalteromonas piscicida strain S2050 S2050_S25_L001_R1_001__paired__contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 70257 35 100.0 36 ................................... AATTGCGATTACGTTTCCGCTATCGTTAAACGAAAG 70186 35 100.0 37 ................................... ATCTTGGTGTATTTTAGGATGTGTTTTTGATTTGTTT 70114 35 100.0 38 ................................... TATGTGCTTTCAGGTAATTCTTTTGTGACATACTCAGT 70041 35 88.6 0 .............................G..GGT | T [70008] ========== ====== ====== ====== =================================== ====================================== ================== 4 35 97.2 37 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : CGACTGCTTTGAGTGTGGTTGTCGTTGAAGCAGTAGAAACGAATTTGTTTTTTCTAGGAGACCATTTATCTTTAAGTTGCAGTAACATTTGCCGTAGAGGCAGCTAAATCACAAAAGATCGCGGGGTGAACCCGCTCCTACTCGGTATGAGTAAACACCATATTAAAAATCTTGTACCTTTTATTTTAGGGTGCGTTCTTATCACTTTTTTTGAGGGTTTTATTCTAAGAAACAACGGGTTATAAGAAAAAGTTGCTACCGTTCTGGATTAACCTATTTCCTAATTTAGGGATTTTTTAAAAATACTATAAATATCATACTGTTAGCTTAAAAATACGCCATTTGGTTCATCCAGTTCAATTAAATCAATAAGTTAGCCTAACTTTTCACTTCCAAAATGGCTGTTTTTTGCTAAAATCAACACTGTTTCTTGATTGGCGCTGGAGGTTCATCCAATTAGCCGCTATAGGCCACGCCAGTCAAGGGCTACAGAAGGTAGG # Right flank : TAGGTGCATTGTTTATCGCTACCTAGAAATGATGATTGGTGTTTAAGACGTTACACAGCGTTAAAAAGCCCTCGTGAGCACCCTAGATTAACAAAAAAGCAAGACCTACAGGATAAACCTATGAAGCTCGTTATTTGTAGGTCGTGATTTATCACGACAAAAAGATTTCCACCGCACAATGTATTGCATTAAAACCCAAAGATCGCTGGGTGAACCCGCTCCTACCCGATATGGGTTAGTGCAATAACAACGCTATGCTTTAGGTGCAACGAGAGGCAGATCAAACTGCACCATTAGTCCGCCCTTTTCGCGATTAAATAGCTTAAGTTGTCCACCGTGGGCAATGGCAACTTCATTACAAATACTAAGTCCTATGCCTGTGCCACTGGGTTTAGTAGAAAAGAATGGCAGTACTGCGTTTGCTAGCTTTTCTTCTTCCATCCCTGCGCCTCTGTCAACAACTACAACGATTAGTCGTTGGTAGTCAACCAGCAGCTTCA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 83052-82805 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEE01000027.1 Pseudoalteromonas piscicida strain S2050 S2050_S25_L001_R1_001__paired__contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 83051 37 100.0 33 ..................................... ATTATTCCAACCCAAAGATAGGGTTTGTCCTTT 82981 37 100.0 33 ..................................... TCTTGCGCAAGAGTTGCGCAAAATAAAAATAAA 82911 37 100.0 33 ..................................... ATGGGTTGCGAAGTTAGCTGCCATACTTTCTCG 82841 37 94.6 0 ...................................TT | ========== ====== ====== ====== ===================================== ================================= ================== 4 37 98.7 33 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAACCC # Left flank : AGATTTAGCAAAAAATGAGATCTACCAAATAAATTTGTGAAGCTTGTCATTTGTAGGTCGTGATTTATCACGACACAGAATTTCCGCCGCTTAAGGTGCGATATAAAAACCAAAAAGATCGCGGGGTGAACCCACTTTTACTCGCTATAAGTAAACGCCATTTCAATAATCTTGTACCTTTTATTTTAGGGTGCGTTTTTAACACTTTTTTTGAGGAACTTATACAAAGAAACAAAGGGTTATAAGCAAAAGTTGCTACTGTTCTGGATGAACCTATTCCCTAATTTAGGGATTTTTTAAAAATACTATAAATATCATACTGTTAGCTTAAAAAGCCGCCTTTAGGTTCATCCAGTTCAATTAAATCAATAAGTTAGCCTAACTTTTTACTTTCAAAATGGCTGTTTTTTGCTAAAATCAACGCAGTTTCTTGATTAACGCTGGAGGTTCATCCAATTAGCCGCTACAGGCCACGCCAGTCAAGGGCTACAGAAGGTAGG # Right flank : TGGTTTTGTGTTTTTGCTAATCATTTTTTGGTTGCAGCAACAAAAGATCGCGGGGTTCACCCGCTTCTACTCGATAGGGGCTAAGCGCTGGGGGTGAGTTGACTACCAAACCATAAAACGAATCGCAATGAGGACATACACTGCCCTCTATTATTCATATTCACACCCTTCCAACGCTAACAGTCTAAAAAGTTAAAACACGACAAAAGATAACAAAAAAAACAATTTGGCAACAAAGCATTCCAAACAAACACAAATTACTTTATGCTGATTGTTAAGGATAGATTCATCACACAAGGACACCTATGTTTGTTGCACAAATCGAATTTAAGCGAATTCAAACTTTTTTGTTTTCTTCCTCTCGTCTGCACGATATGGTTGCCGCCAATGCTTTACTTGCTAAGACTATTCGCTACGATCTGGTTGTCGCCGCCATAGCAATAGAAAAAGCCATACTCCCAGACAAAACGCTCCTGTGCGGCAACGACTCAGACGCACTC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 53-438 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEE01000085.1 Pseudoalteromonas piscicida strain S2050 S2050_S25_L001_R1_001__paired__contig_85, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 53 35 100.0 35 ................................... AGATCAATGGCATAACGCTGGATCAACTTTTCTTC 123 35 100.0 36 ................................... TCATATTAAATATCCTGTAGTTGGAAACTTCATTAG 194 35 100.0 35 ................................... CCATACTGATTAAAACGCATGAACTAAATTGTTTA 264 35 100.0 35 ................................... ACAACATCGGCATTGTATGCGTCTTGTGCGTACAA 334 35 100.0 35 ................................... AGATTTTGCTCTGCTTTTGCTAAGAGAGATATTTT 404 34 94.3 0 ..............................-..T. | C [432] ========== ====== ====== ====== =================================== ==================================== ================== 6 35 99.0 35 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : CGTAGAGGCAGTAGAAACCCTTTTGTCCATATACTTGCATCATCATTGCTGGG # Right flank : CAACAAGATCGCGGGATGAACCCGCTCCTACTCGATTAATATGATTGGAGCGGTTTTAACTAAGCGAAAGGAAGTTGCTAGCGGTGGCTAGCAACGTGTGATTAGACCGAGACTGGCTAAAACCACATTTTATGTCCCCAACCAAATATACAAATAATCCCAAATATCAGTAAAATAAGTGACAAGCGACTGCCCTTAGGTTGGCTTTGTGTTTGGTGTGTGACACTGGCTTTTCGCGCAATTTGTTTGTAAGCACTAAGATTTGAATAATAAACAAAAGCAGAGGTCGTGAGCATCACCAAACCAATAAATACCGCATGCCAATCACTCGAGAAAAACCGAATTGGCTCACCATAATATAGCGTGGTCATTTCTACAAAGTTAGTGCCAAACACGCTGGCAATAAAAATAAGTGCGGTGCCTAACGTGGCGATGTTTTTTATCTTATTTTGATGCTGCTGTTGTTGCTCCCGTAGCTGCTTGGCTTCTTGTTCCATTTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //