Array 1 12841-11752 **** Predicted by CRISPRDetect 2.4 *** >NC_015715.1 Zymomonas mobilis subsp. pomaceae ATCC 29192 plasmid pZYMOP01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 12840 33 97.0 34 G................................ GATGATAAAGCCGCCAAGGCCGTGAAAGACGAGG 12773 33 97.0 32 C................................ TCTCATGATGCTTGCGCTTTTGTTGTCATGAA 12708 33 100.0 33 ................................. TAAGATCAATGAGGGGCATTGTGTCCCAGATTC 12642 33 97.0 33 G................................ ATATAGTTTGGGTTGATTATCAGTGGTAGTTAT 12576 33 100.0 34 ................................. AATATTATTGAAACTCAATTCGTAGGCAAATCGT 12509 33 97.0 33 G................................ TCGGATTAAATAAACACTGAAAAACAATCCCGT 12443 33 100.0 33 ................................. CCCAAACAGCCCATTAATCCATACAGCGACATA 12377 33 100.0 33 ................................. AAACCGTTTCTAGTGATCGCAATCCAGAACGCA 12311 33 100.0 33 ................................. CAAGACATTAATAAAACCTTTCTTAGTTTTGAG 12245 33 97.0 32 G................................ GAGGTTAAGCGTCAAGAAGCATTATCCATCAA 12180 33 100.0 33 ................................. CACCCACTGACCGCACCGAGAGCGTCACCTTAA 12114 33 97.0 32 A................................ TATCGAAGCATGGCGAGGAACGGGCTGCGATT 12049 33 97.0 34 A................................ CTTCAATGGTCAAGGGTCGCCTTAATATCACCGA 11982 33 100.0 33 ................................. TGTTATGGATAACCCGTGAAAAATGGAGGTCGT 11916 33 97.0 34 C................................ CGTGATGTGTTTTCTAAAACTCTGCCTTTGGCCA 11849 33 97.0 32 A................................ TTTGGATGCAGCTCGCTTGAAATCAGCATAGG 11784 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================== ================== 17 33 98.2 33 TGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC # Left flank : GTGTTGGTTCTGGTAACTTACGATGTCAGCACGACGGAAGGGAACGGGGCAAAACGTCTTCGTGCAGTCGCAAAAGCTTGTCGTGATTTCGGACAGCGTGTACAGTTTTCTGTATTTGAAATTGAGGTAGACCCTGCTCAATGGGTAAAACTTAAGGCGCGACTAGAAGATATTATCTTACCAACAGTGGATAGTCTCCGCTACTATTATTTAGGGGCTCACTGGCAAAAACGGATAGAACATGTTGGGGCAAAGTCTGCGACGGATTTAAATGCCCCGCTCATCATCTAGTCTATCTTCTATTCCTGATACAATTTTTCTTTGGTGCGAACCACAAGCGTGCTGCACGACTCGCGGAGGTTCGCATCCAGCTTTGTTATTGAAATTACGCAACAATTTTGTACCCAAAAGAATACTGTTACCTTAAAGGATTTTATTATCTCCCTCTTCGCATATTTACCCTTTTAATTTTAATCTTTTCTGTGCTTTACAATAGGGGC # Right flank : AACTCCGATATTTGGATTGAAATCGAGTGCCGCTTTCCTCGCCTTCCTTCATATCGCGGCTGTAAAATTATGGTTGCCTTCCTTTGTCAACAGAACCTAAATACCTTTCAAATCTGGTTTATAAAGCAAAAATGGAAGGTTACCTTATTTCAAGAAGGAAAAAATTGAATCTTCCTTGGCTGGAAAGGCGAATCCGGTTTGCTTAAAACCTCATTTCAAGACGAAAGGAGGTCTGTAGTTTTATGGATAAAAATAAAAAAGTGGATTTGGACAAAATTTTTCACGAAATGGATGAATTGGGCATAGATGGAAATCATCCAGCTATGAAAAAATCACCAGAAGAAAGCAAAATTCTTGAATAATTTGCCGAGATAAACCGATTTATTGATGAAAAAGGTTTTATCCCCGGTGAAAATCTTGAAAAGCGTTCAATGAATTTATCCGAACGTCGCTTAAAAAAGCGACTTTCTATCTATCGCCAAACAGCGGAATATACAGCC # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1189029-1188329 **** Predicted by CRISPRDetect 2.4 *** >NC_015709.1 Zymomonas mobilis subsp. pomaceae ATCC 29192, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1189028 29 100.0 32 ............................. TCGATGATAGTTCTTCCAACCATCTCATTGAT 1188967 29 100.0 32 ............................. ATCCTAAAACTCTAGTTCCGGTATTCGCACGT 1188906 29 100.0 32 ............................. TCTCTACTGGCAAGGGTGGCCAGTCAGTGAGA 1188845 29 100.0 32 ............................. GTTTTGTATAATCCAATTCCAGTGCTTGCTAC 1188784 29 100.0 32 ............................. CAGGCTGTCGGATGCGGTTCCGTTGCCTGTCC 1188723 29 100.0 32 ............................. AAAAAACGACATATTTACGATTATTTTTCAGC 1188662 29 100.0 32 ............................. TCTCAACGCCAGTTATCGTTGTCCGTGTCGCA 1188601 29 100.0 32 ............................. CGCCGCGATAACATGAGACTTTCCCGTACCTT 1188540 29 100.0 32 ............................. ACGCAATTAACACATACTGATTAACGTTTTTC 1188479 29 100.0 32 ............................. TAGGAGATTGCTTCATGCTTTGCCCGCGTACA 1188418 29 100.0 32 ............................. TTGCACCAATCTGGCGTGCCTTCAGGATCATT 1188357 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : ACATTGAAAAAATTCTGCTCGCAGGGGGATTGAAACCGCCAGACGAAACGGAAGATGCACCCGAAGCGATTGATCCAGCAATTCCGCGTGAAAAGGCATCTGGTGATGATGGTCATCGTAACTGAAAATGCACCGCCCCGTTTGCGAGGGCGATTAGCCCTCTGGCTATCGGAAATTAGGGCTGGGGTATATGTCGGAGCGTATAACCGTCGCATACGTGAACGAATATGGTCTGAAACAACAGAAATGATTGAAGAAGGTAATGCCGTAATGGCATGGAAAGCGCCCACCGATTCAGGTTTTGCTTTTGAAGCGATCGGCGTTAATCGACGAGAAGCTATAGATTTTGATGGCCTCACTTTAGTGCGCTTCAAACCCCTTGAAAAAGAGACCGAGATGCCATTTTCGGAATAGTTTTTTGGCTCTAAATATCCTATAAAAAGTTGGTAGATTTTTTGACATCGTGAATCTATTTGAATATCAAGCACTTACAAGGATGA # Right flank : TAAGCGCTCTAGTTATATTTGCCTTCGCATTTATGCCTATCAGCATTGTTAATGCTAGAGGTTATAGTGGATATCATAGTTATAATTCGACCAGATCATCTACGAGTTCATACTCTGCCCCTAGAGAGCATTATACTCACGATTACTACCGTCAGAATGGAACACACGTGAATGGATATCATGCAACAAATCCGAACAGTACAAAAATGGATAACTGGAGTACTCGGGGTAACGTCAATCCTTATACTGGACAGCTTGGAACAAAAAACCCTTACTAATCTCATTTAAATCAGACTAACACATAGAAATCCGAAAATTTATACTCGAAACAAGAAATTTAAATATGAATATTGGTGAGCTTGAATTTGAAATAGCAAAGCTATGCGGGATCGCTCAATTACTCAAAATACAGACCGAAATCGAAGGTTATTTATAAAAATATATTTTAATATTTTTATTTTTTAATAAAATTATAATTTAATAAGATAAAGCCAGCCCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1312058-1310992 **** Predicted by CRISPRDetect 2.4 *** >NC_015709.1 Zymomonas mobilis subsp. pomaceae ATCC 29192, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1312057 29 100.0 32 ............................. GAAATCTCGATTTCAATGCACCGACTGGCGCT 1311996 29 100.0 32 ............................. CCCCCGCAGCACTAATCGCTCGGACTATCAAT 1311935 29 100.0 32 ............................. GCTTCCGAGACTTTGCCGATTTCAGCAGAAAG 1311874 29 100.0 32 ............................. GCTACGCAATCCTGACGGTGTTATTATCAATC 1311813 29 100.0 32 ............................. AAAAAATAGATAGATTAATTCCAAATTATGAC 1311752 29 100.0 32 ............................. AAAAAATAGATAGATTAATTCCAAATTATGAC 1311691 29 100.0 32 ............................. CCACGCGAAAAAAGAAGGGATTATGGATGCCG 1311630 29 100.0 32 ............................. GAATTACCTTATCTCGCTCTGATGGGCAGGAT 1311569 29 100.0 32 ............................. CCGTTTGAATGAATTTCGGCGTTGCTCGATAT 1311508 29 100.0 32 ............................. ATCAAGCATCGAATTCATATCAAAGACCATCT 1311447 29 100.0 32 ............................. GGTTATGTCTGGGCTAATTGATACCGGAACAG 1311386 29 100.0 32 ............................. CTTCGTCGTGCCATTGTTCAGCGCTGGCAGGA 1311325 29 96.6 32 ............................A AAAATGGCGGTTGTTGCTTTTGATCCGGACGT 1311264 29 100.0 32 ............................. CGTGGACATTCTTTAAATCCAAAATGATGAAA 1311203 29 96.6 32 ...........T................. TCTTGGCTCATTTCATCACATCGCGAACAATA 1311142 29 96.6 32 ...........T................. CGAACCCATGATCTGCACCCCTGCCACGTGGC 1311081 29 96.6 32 ....................A........ TTGGGGGAAGCGGGTTTCTGTCATGTTCGGCA 1311020 29 69.0 0 ........T..TG.G........T.TGGT | ========== ====== ====== ====== ============================= ================================ ================== 18 29 97.5 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : TCCAGTCGGGAACATGCGGCTTGGGCTATCAGTGAAATGGGAATAGAAGCGGTTATTGCACCGCGCTTTTCTGATATTTTTTCGGGTAATGCTTTTAAAAATGGCCTATTAACGGTAGTTTTACCCGAAGAAACAGTTGAGCGTTTGTTAGAAGTTGCCAAAACAGATCCTATTACGATTGATCTTGAAAATCAGGTTGTCACCACGCGGTTCCAAGATCGTTTTCATTTTGATATTGATCCTTTCCGTAAGCGTTGTTTGCTGGAAGGCTTGGATGAAATTGGTCTTACCTTGAAAGAACAAGATAAGATTAGCCGCTATGAAGATGTGTTAGCCTCTGATCGGCCTTGGGTTTAAAATTTCTTCGGATGTATTCTGTCTATTTTTTGATGAACAGCCCGTTTTTGCGGGCTGTTTTTTTGCCCTGAATAATCTATAAAAAGTTGGTAGATTTTTTGACATCGTGAATATTGTTTAATATCAATCCCTTATCGGGATGA # Right flank : CGGGATCGGCTTTTTAAAATTTGTTCCGCTAGTTTATAATCCGATAATTTATCGACATCGATACCCGCTTCTGCCTGCGCTAAAACAACAGGTTGAATAGTAAGGCCAAGCGTATGACCGACTTGGGTTAAGGCTTTTTCAAAGCTGATGGTGCGTGTAACGGCACGGATAGCAAGGCAAAGCCCGAAATGGCGGATAAGTTGCCATGCTTTTTTGCGATCTTGTTCTATCATTGACCATTGGTGAAGCGCGCTTTTTACTTTCTCATTTCTCATCCCAAAAAGATTCGCGCCACTATAGGCCTCATCCGAAAATTTGAGCCATGTACGGCGATTTTCTGGATAATGTTTTAAAATAGTTGTCCGGTTTACGACCCCCACACTAAGATCTTTATCAGGGGTTTTCATTAAGAATTCGGTTATAATTTCGGGTGTCAGTAGCGGATGATCCGCCGTTGTTACCAAGAGTGGCCATGTGATCTTTTTTTGATCAATTAAGGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //