Array 1 786698-788739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDV010000045.1 Salmonella enterica isolate 0189_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 786698 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 786759 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 786820 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 786881 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 786942 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 787003 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 787064 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 787125 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 787186 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 787247 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 787308 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 787369 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 787430 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 787491 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 787552 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 787613 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 787674 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 787735 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 787796 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 787857 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 787918 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 787979 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 788040 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 788101 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 788162 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 788224 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 788285 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 788346 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 788407 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 788468 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 788529 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 788590 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 788651 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 788712 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 804872-806042 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDV010000045.1 Salmonella enterica isolate 0189_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 804872 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 804933 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 804994 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 805055 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 805116 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 805177 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 805238 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 805299 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 805361 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 805464 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 805525 29 96.6 32 .........C................... TTCTTGAATATGATTGCGGGTATATGTGGATA 805586 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 805647 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 805708 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 805769 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 805830 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 805891 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 805952 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 806013 29 96.6 0 A............................ | A [806039] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //