Array 1 619238-616892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVVX010000001.1 Oryzicola mucosus strain ROOL2 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 619237 36 100.0 30 .................................... AACAAGCTGCGGCAGGTGTCCACCGACGCG 619171 36 100.0 30 .................................... AGACTGATGTTGTTGACGATTCTGGCGTCT 619105 36 100.0 30 .................................... TGGTCGGGCCGCTTGCTCTTTCCTGATGAG 619039 36 100.0 30 .................................... TTAAGGCGCATCTGGAGCGCCAGCGCGAAG 618973 36 100.0 30 .................................... AGCAGCCCCCGCCTCCTCCCCTCCACCAGC 618907 36 100.0 30 .................................... TGAAGAACCTCGCCGAAGATGCGGACTGCG 618841 36 100.0 30 .................................... TTGACCACGCGCGGCTCGCCAGTCCATCTC 618775 36 100.0 30 .................................... CGATTCCGCTTTAACCACGCGAAAACATCG 618709 36 100.0 30 .................................... CGGCAACGTCCGATCCAGATAAGCCATGAT 618643 36 100.0 30 .................................... GTATCGAGGGGAACACGCTGTTCACCGACG 618577 36 100.0 30 .................................... TAGACCCGGCCGTCGGCCGAGACGATGGTC 618511 36 100.0 30 .................................... TTGCGCCGTTCGAAGACATCGGGTTGAGCC 618445 36 100.0 30 .................................... GCACCCGTCACCGTCCTCGTCATCTGATTT 618379 36 100.0 30 .................................... GCGTCAACACCATGCACGACCAGGCCATGA 618313 36 100.0 30 .................................... GCGGGCGGGTTGTACTGGCTGACAAGGTAG 618247 36 100.0 30 .................................... TCGCGCGTGATCGTGGCCGAGCCGGTCAGT 618181 36 100.0 30 .................................... TGTTCGAGCGCTCGATTGGCATGTCGGGAC 618115 36 100.0 30 .................................... GCCGCCGTGGTCGCGTAGATGACCCCCCCA 618049 36 100.0 30 .................................... AGACTGCAATGGTGCTTTTGACATGTGGGT 617983 36 100.0 30 .................................... GCCTTCCAAGCGCTGATCGCCTTCGGGCAG 617917 36 100.0 30 .................................... CCGGCCTGCATCGAGCAATGACGCATGCCC 617851 36 100.0 30 .................................... GGGGAGTAACGACGACAACTGTCATGGAGC 617785 36 100.0 30 .................................... GACGCATAGAACGGTTCGCCGTAACAGCTC 617719 36 100.0 30 .................................... CGCAGACAACGACAATCATGCTGCCACGAA 617653 36 100.0 30 .................................... TCCTGGATCAGCCGAAACAGCCACGAGGGC 617587 36 100.0 30 .................................... GACCTCTTGTCGGCATGGCAGTCAACACGA 617521 36 100.0 30 .................................... ACGCCCGCGTAGTTGTGAATGTTCTGGTTG 617455 36 100.0 30 .................................... GCCACCGGCTCTGCCTGCTCGTCATGAGCG 617389 36 100.0 30 .................................... TGGAAGAAAAGGCAGCTTGAATGCGCATGA 617323 36 100.0 30 .................................... AGAGACCCCATCATCCACATGCAATCGCTC 617257 36 100.0 30 .................................... ATAGACCGATGATGTGTCCTCACCTGCCAT 617191 36 97.2 30 ......T............................. AGGGCCGCGCCGGCCAACTCCTGGCGAATT 617125 36 100.0 30 .................................... AGCGTGGAACTCAAGGTATAGTTACTGCGA 617059 36 100.0 30 .................................... GTGGGGGCCTCTTCAGCCTTGCGCGCAATG 616993 36 100.0 30 .................................... CCTAGTCGGCCGACATCGCCCGGCGACAGG 616927 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 99.9 30 AGCCTAGCAGTTCAGAAATCGCGGGCCAACTGCAAC # Left flank : CCGCGCCCGCCTGATCCGCTGGCGCTCGCCGCCCTCGGCCGCCGCGCGGAGGCGCCGGCATGACCACCTTTTACACGCAACAGGGAGGCGGCGAGCCAACGCATCTGTCCGCCTACAGGCTCATGTGGATGCTGGTGACGTTCGACCTGCCGGTGGAAACCAAAAAACAGCGCAAGGCGGCCAGCGCCTTTCGCCTGCATCTGCTCGATCTCGGCTTCGAGATGAGCCAATTGTCCAACTATCTGCGCATCTGCAACGGCAAGGAGCAATTCGATGCCTATATCCGCAAGATCGAGAGCAGCCTGCCCGAGCGCGGCGACATTTTCGTCTTCCAGTTCACCGACCGGCAGTATGAAAACATCATCCGATTCTCCGACCAGTCACGCCGGAAGCGCTCGAAAAATCCCGAACAGCTCGCGCTTTTCTAGCGATTCGCTGGATTTCGGTTGGCTTCCCGGGGCTCAAATCGCTTGGAAAACCAAGGATTTGAGCCCCGAAAT # Right flank : CGGACGATCGCGAATGTTCTCGGCTTCACGGTGTTATAAGGACTTTCCGATAGAGCTGACTGCATCTGAGGAGGCGGCGTATGCAGTCAAGTCTGGCGTTGAGTGTCGGCCTGCCGGCGGCGCTTTGCATCATCATGCTTGGTCTGGGGCTATCGCTTAGGCTCGAAGATTTTGTTCGTGTCCTTGCGCGCCCGTGGCCGGTGATGGTCGGTCTGTTCTGCCAGATCATCCTGTTGCCGGCCTTGTGTTTTCTCCTTGTGTCCTTGTCCGGTCTTCCGCCGGCGATCTGCGTTGGCATGATGCTGCTTGCGGCAAGCCCGGGTGGGACTTCCGCGGCACTGTATACGCATTTGGCGCGCAGCGACGTCGCACTCAGCATTGCGCTGACGGCCATCTCCTCACTGCTCGCGATTGTGAGCTTGCCGATCATCGCAAACCTGTCCCTGCTGGCGTTTTACGGTGAAAACGGCGCCGTCAGGCTTCAGCTTCATCAGGTTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTAGCAGTTCAGAAATCGCGGGCCAACTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //