Array 1 97023-97324 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGKA01000003.1 Vagococcus elongatus strain CCUG 51432 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 97023 37 100.0 30 ..................................... TGCAGATGTAATACGATTGACTGTGTCGGC 97090 37 100.0 29 ..................................... CAATGATGTGGCTGGCCGAGTGTCAGCCT 97156 37 100.0 29 ..................................... TAGACGCCTTTCGTCTTCCCCTATACTTC 97222 37 97.3 29 ....................................C ACTATATGCTTCCTGTAACTGCCCATTCC 97288 37 97.3 0 .............................A....... | ========== ====== ====== ====== ===================================== ============================== ================== 5 37 98.9 30 GTTTTTGTACCCTATATAATTTCCTATCAGTAAAACT # Left flank : AAAATCAAACGTGAAGAACGAATGACTTGGATCGTGTTGGCAAATCCGGAAAGATTTTTGGAAAGAAAAGATATTTCCTATCTATTTGGTCAGCTTCACGATATCGCCACCGAAACTAAACAGCTTAAATTTTTTATTTTAAATAATTCTAGTTTAGTACTGGATTATACAACGGAAGATATCGATAAAACAGTTTTATTGTTTGACGATTATCAACAATTACCAAGTTTTGAAATTTTTAGAGAAAGTATCGAAAGAAATTATCCCGACAAATTTTCTTTAGATGAGTGTCAATTGGTTTCTTCATTTTATAGGGTTTGTAATTTCATCGGTGAATCTAGACACGATATTTACATCAATCCCAAGGATATGGTACTATTACGAGTGATGAAGGAATTATTGATGGATGAAAGCAGGATTGAGACGTCATTTCAGCCTCTCACCCAGTTAGAGAAACAATTTTTAAAAGATTGGTAAAGTTAGCATAATTTAAATTTGAG # Right flank : TAATTTGATAAAATTGTCGACTATAATGGGTATGCTAATGGCTTTCATGAATTTTATTTTAAAACATATATGGACAGCCCTTTGCCTAAAATTTGAAAAATGCGTTCGGACCTTACATCCGAACGCATTTTTCTATTCACTTACTTTGCTGTTAGCTTCAGGAATCTATCGTCAGCCTAAACGCAATTCAGGGTATTCAGTCATATCTAAACAGTTAAGTTAATAAATGTCGACTGACACATAAGCCGCAAGCCGCAACCGCGCCGTTTGTTATATGATATTTTTTCAGTTTAAGCTGTTGTTTTTTCTCTTTAGCCAGTAAAGTAATTTGTTGCTCCATATATTCTTTTAATAAAGCCAGCAATTGAGGTTCATTGAAGAGTCGTCCGTGGATGAGCATTTTATTGGAATCAATCATCATTGAAACATTGTTGATGGTAATCGACAAATATTTGATGGCATTGTGGAGAATATTAATAACCCCTTCATCCCCAAGTTGG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACCCTATATAATTTCCTATCAGTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 8503-12339 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGKA01000025.1 Vagococcus elongatus strain CCUG 51432 25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 8503 33 100.0 33 ................................. CTTATAGATGTAAAGCTTCTTATTTTTCAAATC 8569 33 100.0 36 ................................. AAAAATCGTCTCGGCATAATGTCCAAAGTCTAACCA 8638 33 100.0 37 ................................. ATAAATTTAAAATAAGCAAACCGTAATGGTCCCTGCA 8708 33 100.0 35 ................................. AGTAAGAATCAAATTTCTATAAATAAAACTGTGTC 8776 33 100.0 34 ................................. GATTTTGACCAAAAGGATTCTTTTGCTTATATTT 8843 33 100.0 38 ................................. CGTTATAGGTATGATTGTTTTAGTTCAAAATGCTCAAT 8914 33 100.0 34 ................................. ATTTACTTTGTCCATTTTTCACGCTCCTTAAAAC 8981 33 100.0 35 ................................. TGTCCCGTCGCCTTGACGGTGATTTCCGGCAAAGA 9049 33 100.0 37 ................................. CGCATCGTCCTTAATCTCTACGACCGTTTGGGATATC 9119 33 100.0 36 ................................. TTTGACAACTTTGTGCGTACCGTCAGCAGAATACAA 9188 33 100.0 35 ................................. ATTGATACACTTTTTAGCGTACGCTACCGGATCAA 9256 33 100.0 35 ................................. CAGTTTATTGCTACGATCACACCGTTAAACGCAAC 9324 33 100.0 34 ................................. AGATGACTCAAAGTGTTTGCCGTAAAATTTCAAG 9391 33 100.0 35 ................................. AAATACTGATGAAATATATTATACGCTTAAATGGC 9459 33 100.0 35 ................................. TGTTATAGGTATGATTGTTTTAGTTCAAAATGCTC 9527 33 100.0 36 ................................. TGAGGACAAGCAACGAGTTAAGGATGTTTTAACAAC 9596 33 100.0 35 ................................. AACTTTTCTATTTCTGTATCGCTGAGCAAAACATT 9664 33 100.0 35 ................................. TGTATCAAACCCTACCACAGCCGTTGGTACCGTCT 9732 33 100.0 34 ................................. GCTTCATATTCTAGCTTTCCTTTTTGTTTATCAC 9799 33 100.0 36 ................................. CCGGGACCACTGCCGTCGCCTGCATGATAGCCAATG 9868 33 100.0 35 ................................. TACTCGTATATGCCACCTTAAAACCATTTTCTTTT 9936 33 100.0 36 ................................. AAATCCTTTCCCATATCTTTTAATGTGGCTAAATGC 10005 33 100.0 34 ................................. TTTAAAAAAGCTGTCACCTTTTGCGTTAAAATGC 10072 33 100.0 36 ................................. GATTGCGATTTTTGACAACACATAAGATCGGGCATT 10141 33 100.0 33 ................................. CAAACTCAGGGAAGATTATAACTTGGCTTATTT 10207 33 100.0 34 ................................. CCACTCGTCTTGACCTTTAGCATTCTTGACGATT 10274 33 100.0 34 ................................. GAAAAGCTTTGGGCTGATGATTTATCCTAAGTCC 10341 33 100.0 35 ................................. AAATGTAACACCTCCTTTGAATCTGATTATATCAA 10409 33 100.0 34 ................................. ACCCCTTGCCGATCAAAATGGTAAATCATCATCT 10476 33 100.0 33 ................................. TTAAAAATGATGTACCGCTGCCTAAAAGATATA 10542 33 100.0 34 ................................. CTACTGGAGAACTCTTTTATCTGCATACAAAAGG 10609 33 100.0 36 ................................. ATATTTCTCGACGATTTTTTATCTTACATTATATAT 10678 33 100.0 35 ................................. TAGCTTCCACTCGCCTGATATATTTAGTCCCAAGT 10746 33 100.0 37 ................................. AATGCTCTGAGACTTCTTAAATTCATAAAATCTGATC 10816 33 100.0 35 ................................. ATATTTCTCGACGATTTTTTATCTTACATTATATA 10884 33 100.0 36 ................................. ACACCTCATGCCACGTTCTCGTCTGACCTCGTCTCT 10953 33 100.0 34 ................................. ATGTTGGCTATGTACCTAAAAAAATAGCTACGGA 11020 33 100.0 35 ................................. ATCCAAAGTTCAGGCTGATGGATTTCCTCTACACT 11088 33 100.0 36 ................................. GTCTATGTGGTCACAGATACTTTTTCCAGTGATCAA 11157 33 100.0 34 ................................. CTTTCTCTATTACGTTACATAATCGTCAGTCTAA 11224 33 100.0 36 ................................. TTTACGCAACGATGTATACGTTTATTATTCGGAAAG 11293 33 100.0 34 ................................. AACTCAACAATGTCATGTTCTGCTTCGCGCATTT 11360 33 100.0 34 ................................. TTGGCGGGGATGATATTGGAAATATTGTAACAGT 11427 33 100.0 36 ................................. TGCCATCTTTTAGCGCGTCGTAAAGCTCGTTAACGG 11496 33 100.0 34 ................................. CCTGCACCATCATCGATTCGTTTGATTAAACCCG 11563 33 100.0 34 ................................. TCCCCGATAGGTTTATCGGGAAGAGAAATTTCAT 11630 33 100.0 35 ................................. AACAGACACAGACTTAATCGATTGCCTGAACACTG 11698 33 100.0 35 ................................. ATGCGGGAATTTAGAGCGACACGGTTGGCGATTGA 11766 33 100.0 35 ................................. AATCATTTATCGCACCGCCTTTAACAAGGTATTAT 11834 33 100.0 34 ................................. TTTTCGTACTTGTTTGCTATTCTTATTGCACATT 11901 33 100.0 36 ................................. TTGAGTTGTCGTACTGTGAGCAAGACAAATACACCA 11970 33 100.0 36 ................................. ACAATAATATACGTTTACTGTTATTTTTCCACTAAA 12039 33 100.0 33 ................................. TATACCGGAGAAAGGCTTAATCATCAAGCCTAG 12105 33 100.0 34 ................................. ATTAGATATTTCAATTTTGCTTTGAGTATATTGC 12172 33 100.0 35 ................................. ATTCGATATGATTCTGCCTCAAACACCAAAGACAT 12240 33 100.0 35 ................................. AGTTTATGAAATTGTTGAGGAATTGACTAACGATG 12308 32 90.9 0 ..................-....A...A..... | ========== ====== ====== ====== ================================= ====================================== ================== 57 33 99.8 35 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : TGGATGAGTACCCACCGTTTTTGTGGAAGTAGGTGAGAGGAAATGTTTGTATTAATCACTTATGATGTGGCAACTAGCTCTGAAGGCGGTGTTAAAAGATTGAGGAAAGTAGCAAAAAAATGTTTAGATCATGGTCAGCGAGTGCAGAATTCGGTTTTTGAGTGTGTTTGTGACGCCACTACTTTAGCGCAGTTAAAGATTGATTTAAGAGAAATTATCGATGAAGAACACGATAGCTTGCGTTTTTATATTTTGGGAAAAAACTATCGTAATAAAATTGAACACTATGGTATAAAAGACTCTTATAATGTTGAGGGAACTTTAATGTTTTAGGTGCGAATGTTATGTTCACATATTTTTATAGGGTGATTCGCACTTGGAAAACAAGTTTTAACTAACAATAATCACCAGTTTTCTTAGTAAATTTTAATTTTTTAAAGAAAAGCGCGAAAAAATAAGACTTATTAAGCAAATTCGTATGATAAGTTTGAGTTTTCGCT # Right flank : TATATTTATGCAAAATGTCTCGCTTCTAGGTTCAGTCTCCTTCTTTTTGAAATGAATAGTTGAATCTTTCCATGCCCGTTACAGAAAGAATCAGTTTATACGACAGCTCTGTATTCAATTTTCAAAGAAGCAACAAAGCATGGTCAAGCTCGATTAAAAGACTTTATACAAAAAAACATATCGTAGTCAAAACCGTAGTCAAAATAAAAACGAGAGCTCCCGTATTGCTGTAGACGTTGCTACAACAGGTTTAAGGAGCTCTCGAAAATATAAGTGGACGGTAGGATTCGAACCTACACCTCGATGATAGAGAAAATAAACTTTCAGCAATGTTTTGAAAGTATCAAACAATCAAAACTCTCTATGGAAAAATGCCTCTTGAGTCAAAACACCTCGTTCATCCACAAGTTATTATTGAACTATGAGCTCATCATAACCCCAAAAAATTAAAAATCATTTAAGAAAAAACGAAAAAACTTTGAAGTTATTTAGAATTTTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.80,-3.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //