Array 1 28837-27528 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOZ01000104.1 Vibrio cholerae strain A12JL36W30 NODE_148_length_37531_cov_29.707682, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28836 28 100.0 33 ............................ CGAGAAAGGCGAGCAAATGAAAGGCGTTACAAA 28775 28 100.0 33 ............................ CCAAGATTCGGATTGCGGATGAAAAGAAAGCGC 28714 28 100.0 33 ............................ CTACCGCGCCACCTGCAAAAACCAGAGTGGTAC 28653 28 100.0 33 ............................ TACTCATTGTTGCCTCTCCGCGCTTTCTCGCTG 28592 28 100.0 33 ............................ TCAAAGTTGCTGCTGGCTTAAAAGACACGCTGG 28531 28 100.0 33 ............................ TCAGTCCCTACTTGAAGCTGATGGACTCGTTCT 28470 28 100.0 33 ............................ CAGGTCGCGTCTGTTACTGATATGCTGATGTAC 28409 28 100.0 33 ............................ TCCATTGGCGGCTCATTGTATTGAGGCGGTTCG 28348 28 100.0 33 ............................ TCATGAAACAAGGCACAGACCGTCAAACAGGCC 28287 28 100.0 33 ............................ CCATTGAGTATTTGCGTCACCACAACCAAACAG 28226 28 100.0 33 ............................ TCCATAATTTAACCCCTTACTCGTAGAAATATT 28165 28 100.0 33 ............................ CGACACGGCCAGCCTTAACGCATTGCGTGATGA 28104 28 100.0 33 ............................ TGGCTGTTCTTACACATCTTTTTCTACTTTCTG 28043 28 100.0 33 ............................ TCAAAGTTGCTGCTGGCTTAAAAGACACGCTGG 27982 28 100.0 33 ............................ TACAAACCACTGGCTGAAAAATACCTCGCTGCT 27921 28 100.0 33 ............................ CACACGCAGCTGGTTCACCAAGTCCGGTTTAAA 27860 28 100.0 33 ............................ CAGAGTTTAATCGCGCCAAGCGTGAGGCTCAGT 27799 28 100.0 33 ............................ TTCGGATAAAGTTGGGGCGCACCACGGAATCAT 27738 28 100.0 33 ............................ TATGGGCTGTATCTTTGAAAGCCTGTGCTTGTT 27677 28 100.0 33 ............................ TATTTGTCCCTCATCTCATCCTGTTGATAATGG 27616 28 100.0 33 ............................ CCACGCTCATCTCTATGTCGCAAGATGTTTTAC 27555 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.7 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //