Array 1 3581443-3582085 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086102.1 Streptomyces anulatus strain YINM00001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3581443 29 100.0 32 ............................. TGCTGGCCGGATCCCGCCATTCGGGTCTATCG 3581504 29 100.0 32 ............................. GTGGACCTCGGGGACGGCGAGGACCTTGCGCA 3581565 29 100.0 32 ............................. CGCCGCCGCCGGAATCCTTGCCCTGGGTCCAG 3581626 29 100.0 32 ............................. GGGGCGCTGGCCCGTCGGCTGGCCGGACACCA 3581687 29 100.0 32 ............................. GCGGGCGGCTCGACGACCTTCCGGCCCCCCGA 3581748 29 100.0 32 ............................. ACGTAGCCAGCGTTCGGCCGGTAGCCGACGGG 3581809 29 100.0 32 ............................. GCGCTGCCGTACGGGCTGGACGCAGACGACGT 3581870 29 96.6 33 ..............C.............. GCTTCCCACAGCTCCCGGACAGTGTGAGGCGAT 3581932 29 100.0 32 ............................. GGATGTCGGATCTTGAGGTGTGTTGGTCGCGG 3581993 29 100.0 32 ............................. GGCTGGGTCCACGGACCCATTCCGGGAGCAGG 3582054 29 89.7 0 .....................GG..G... | CG,G [3582071,3582081] ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.8 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : TGCCCGCACCCGGAAACCCCCCGCCCGGCGCACCGACCCCCGCCCGCCACCTCCTCGTGGAATGCACCGACTGCGGACGCCCCGGACCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACTCCGGCTCCATGGACGGCGAGAACTCGCCCCACCCCGCCGACATCGCCGACGTCAAGGCACACATGAGCAACCTCCGGGGCCTGCTCAAGCCCGTCTGAGTGCGACAGTGGGGCACACGTCACGGCTCTGGCATATAGAAGCCATGAGCGAGCTGCACCCAGCGAAACGAACGCCCCTCGGTACGGGACGATCACGACCCTTGCTTTCAGGACGCCGCCTCTGGCAGCCCGCAAAGGGCAGAATGAATCCCGACGTCTAGAGCTACGAACAGAACCGCTCACAACCCAGGGGGCGATATGTCCTTTTCTCTGAAGCTTGCCGAAAAGCACCACGCGCCTGCATAGAACCGCAGGTCACGAACT # Right flank : CCCTCCGGTCGTCCGGAGTCGCCGGCATCTACAACATCTCCACCCTGGCCGCCCACCGCCGGCGCGACTACGGCGGTGCCATCACGCTCGCGGCCCCTCCGCACGGCCCGCGAGCGAGACCACCGCATCGCGGTCCTGCAGGCGTCGGGTGACGGTGAGCCCGTCTACCGCCGCCTGGGGTTCCGCTCTTGCGGCCAGTTCACCGAACATGCCGTCAACCCCTGAACCGCCAAGGCTCCACGGACCGGCCGTCCGCCATTCCTGAATGGGCCGGTCACAGCCACTCATTGATGGCCTCTACGAGGACAGTGGCCCTTCCCAGCCTGTGATCGCGGGGCTCGGTGAACACACCGTCCGGCGACTCCTTCCGCAGGTCACCCCGTTTGCGTGCCCCGGGCCTCGGTCCTAGTTACCTCGTTGTGTGTACGCCCCTTGCGGCCGATCATGGGCGTCGGAACCAGCAAGGAGGAACAGGATGGGGCTCATGCTCTCCCCCGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 111454-108497 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086103.1 Streptomyces anulatus strain YINM00001 plasmid pYINM00001, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111453 29 96.6 32 ........T.................... TCCTACTCTGCTCCGTCGGTAGGCGACCGGGT 111392 29 100.0 32 ............................. GTCGACGAGGGCGCGTCCGTGGGGGTCGTATC 111331 29 100.0 32 ............................. TGCTGAACGGCGCGGCCGCGGATCCCGCCGTC 111270 29 93.1 32 ..........................T.T TGGATCAAGGCGCGGGGCCTGACAACGACTCC 111209 29 93.1 33 ..........................T.A GCAGATGGTCAAGATCGCCAAGGCGATGGACAA 111147 29 96.6 31 ..........................T.. CCCTCGCCCACGGTGCCGGTGGGCCGTCTCC 111087 29 96.6 32 ..........................T.. TCCACTTCGGCAGCCGCAAGGCGGCGGAGGAG 111026 29 96.6 32 ..........................T.. TGCCAGACCTGCGGGACGAAGGAGGCCGTGGA 110965 29 100.0 32 ............................. GTGATCCACTCGGCGGTGTGGCGGCGGATGCC 110904 29 96.6 32 .......T..................... TCGGCCCTCGTGCTCATCGAGCAGGGCTACCC 110843 29 100.0 32 ............................. CCGAAACCGCCGCCCGCCGCGCCAAGCTCCTC 110782 29 96.6 32 ............T................ GTGATGGCGCCGGACTCGCGGAGGTCGTCGAG 110721 29 100.0 32 ............................. GGGTGGAAGGCGCACGAACTGCCCATGCCGTG GT [110708] 110658 29 100.0 32 ............................. AGTCCACTCTGGCCTGTGACGCAGATCACGGG 110597 29 100.0 32 ............................. CCTTGTGCGGCACAGGCTGTCTCCCAAGGGCC 110536 29 100.0 32 ............................. GACGGGGCGCACGTCCTGAACGAGATGGCGAA 110475 29 100.0 32 ............................. CTTCTTCGAGCCCATCCGGCTCTTGAGAGGGC 110414 29 100.0 32 ............................. ACGCCGACCAGCGGCGGCGCCGTCGTCGGCGG 110353 29 96.6 32 .....T....................... TGGCTGGCCGAGCTCGAGGCGGAGAACATGCA 110292 29 89.7 32 ..A...............A......A... CCGACGGCCGCCCCCTCCCACCGGGAGACGAC 110231 29 100.0 32 ............................. CCCCCGAGGTAGGGACACTCGGGGGCTTCCGG 110170 29 100.0 32 ............................. TACCGGGTGTTCACTCCGGTGTTCCCGACGAT 110109 29 100.0 32 ............................. TCGGAGAAGTGGACGGACGTGGACCTGGGCCA 110048 29 100.0 32 ............................. GCCGCATTCCCCGCGACCGCGGTCCCCGGCCC 109987 29 93.1 32 .....................A......C CGCCCGCCGCCGCGGCGAGTTCCTGCACGGCC 109926 27 93.1 32 ........--................... CTCGTCGAGGTCGAGTTGTGGCACGCCCACAG 109867 29 100.0 32 ............................. TGACGGCTCGTACAACATCATCGGCATCGAGC 109806 29 100.0 32 ............................. CAGGCGGTCGCCAGGAGGTTGGCGCGGACGTC 109745 29 93.1 32 ...T......................T.. TCCAAGGGCTGCTTTCTCGGATTCTGTCGCCA 109684 29 96.6 32 ..........................T.. AGTCCACCGACGAGGAGCGGGGGGACGAAGAG 109623 29 96.6 32 ..........................T.. AGGAAGTCTGGCTACTCACCAGGGGAAATCCG 109562 29 96.6 32 ..........................T.. GAGTCGACGACCCGCAGAGGGCTCGCACCCTT 109501 29 93.1 32 ..........................T.T CCACGCGCCGCACCTGCCGCACACGAGCTGGG 109440 29 96.6 32 ..........................T.. GAGGAGACCCCCATGCCCGCACCAAGGGTGAT 109379 29 96.6 32 ..........................T.. GATCTGCCCGAGCGTCGAGTAGGACAGGGTCC 109318 29 96.6 32 ..........................T.. TCCCGGACCTCCGCAAGGACCGGCCCGATCAC 109257 29 96.6 32 ..........................T.. ACCGGGTTGAGCTTCTTGAGCGTGGCCATGCT 109196 29 96.6 32 ..........................T.. TCGACCAGGACACCCTCCCCGGCACCTGACCC 109135 29 96.6 32 ..........................T.. ACCTTCGCCACGTCGACCATGCGCGTGCCGAT 109074 29 96.6 32 ..........................T.. ACGGGCGGCACCGGCCAAACGACCAGCGTCAC 109013 29 100.0 32 ............................. CCGACGCCGTCGGGTACGGCGACGGTGCGGCA 108952 29 96.6 32 ............................C CCCTGCGCATCCAGCGGCACCCCACCCGCGAA 108891 29 100.0 32 ............................. TCCTACGCATTTCCACTCGGAATCGACGGGCT 108830 29 100.0 32 ............................. GTGAACACGGCGCTGGCCGGGACCGAGGGCAT 108769 29 96.6 32 ..................A.......... ACCGAGGGGCTCGTGGAGACCGTCCAGGGGTC 108708 29 100.0 32 ............................. TCACCCAGGGCGGTGCGGCGGCGCGCGCGTCG 108647 29 100.0 32 ............................. GGTGTTGAACCCGGCGGAAACCGGGAGCGTGG 108586 29 96.6 32 ..................A.......... GAGCTGTTCGACCGGCAGGCCACACCGACCCT 108525 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 97.6 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : TCCCGGTTTGTCCGGGTCACTCCTTCGTGATCGCGGCATGGAGCCATACGAATATGGCGAAGACGAGACTCCAGAAGTCCCAGCTGACACCGCTCATACCGCAGATTCCTTCCATTGATAGCAACTATTTTCGACAGTTCGAGGAATAGTGCCTATGGCGCACACCGCACCGAGAGGCAGCGAAAGCCTACGGCTTGTTTGCGGCGAGCCGACGCCGAAGAGGCGGAGATGTATGTATAAATCCACTAAAGAAAGACAAAAAATATACATCCATACAAGCTCTTTAGAAATAAGATCAGCCTTCTTGGCTATTACATTTAATGGACACGACCGGGATTGATTTATTCGATAAATTTTCGAATAAATTTCCAACTAGAAGAGGGATCCGATGGAATGCTGAACCGCTCACACATCTCCGCGGCGTATGTGGGCCTGGGCAGCGAGGCGCCGTCCTCGTAGGCGTCTTGCAACTCGCGTACTTCGAGGCGTTGCAGGCGGGC # Right flank : ACCTAGTGCCGCATCAGGCAACGTTCGCCCTCAAGTCCACCTGATCTGGAACCGTGTCAGTCATCCTCCAGAGATCTTCCCGGTTCGTGTCGCCGCGCGAACCTGGTACGAGCGGCGTCGTGGGCGCTGCGCAGAAGCTGCACGACCGTGTCCGTTGTCCTCGCACCAGGATTGACGACACAGATCCAGCCGAGCGCCCCGTACACCGGGTGCGGCATCACGCTGTCGGCGGCTGCATAGTCGCGAGGTCGGGTGAGGCTGCGCGGTTCCTCCCCCGTGAGTTTCCGGAACGTCGCACGGTCGGCGTGGATGTTCACGCGCCAGCGGCCCGGAGGGTCAAGGTCACAAGCGGCGTCGTCGGGGTAGTTCTTGGTGACGATCGTTCCGTAAGGCTGGACGTTCTGAGGCATCTGGCCGTCGGGGGCGTAGTAGAAGTACGCATCCCCCCACGCGATCTCGGGGAAGTCGCCGCCCGGCTCCGGGACAACCACGAGCGCCCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGTCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 120524-122444 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086103.1 Streptomyces anulatus strain YINM00001 plasmid pYINM00001, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120524 29 100.0 32 ............................. TAGTACCCGCAGATGAAACAGCTGAGGTACCG 120585 29 100.0 32 ............................. TAGCCGAGGAGCAGAGCGGCGATGCCGGTGGC 120646 29 100.0 32 ............................. TAGAACTTCGACGTTCCGCGCCGCATGTACTT 120707 29 100.0 32 ............................. TACGCAAAGGCCGCAATGGAGGTGCACCTCGA 120768 29 100.0 32 ............................. CGTCGGTCGTCGGCGTCACGGCGGGCACGGCC 120829 29 100.0 32 ............................. CCGATGACGCCGACCAGGGGCATGCCGACGGC 120890 29 100.0 32 ............................. TTCGGCCGCATCCGGGCGGGACAGACGATCGA 120951 29 100.0 32 ............................. AGCGCCGAGCTCGACCTGCCGACGGTCCGGGT 121012 29 100.0 32 ............................. TCGCGGGCCAGTGCCTCGGGGGTGAAGAACGC 121073 29 100.0 32 ............................. CCGCCCTCGCGAGCGGGCCGCGCGGTGTAGGG 121134 29 100.0 32 ............................. CCGAGGTTGTCGATCACGGGGTGCCCCCTGAG 121195 29 100.0 32 ............................. CCACTTGCTCTGATGCGGTGGCTGGTCCGCCT 121256 29 100.0 32 ............................. GTCGGCCAGGGCGGACACCGCACCCCGTTCGA 121317 29 100.0 32 ............................. CCGAGTTCACCGGCGACACGGCGACGCTGGCC 121378 29 100.0 32 ............................. TGGCTGCGCCCCGCCCAGGGGTACTACCCGCG 121439 29 100.0 32 ............................. GAGAGAGACATGGCGAGGACCGCGTACTGGAC 121500 29 100.0 32 ............................. TCGGCCCGGAGTGCCTTCGAGTGGTACGGGAA 121561 29 100.0 32 ............................. GGGTCAGGCGGTGCGGCCGGTCATCTCGTTGA 121622 29 100.0 32 ............................. CAGCGTGCACCGTCGGGAGGCTGCTCGACGGC 121683 29 100.0 32 ............................. CGAACCGGGTACGGGTCGCCGAGTCCTCACGG 121744 29 100.0 32 ............................. ACGATCCGCAACCTGCACGGCCTGTTGTCCGG 121805 29 100.0 32 ............................. CTCGCAGCGGCCGGCACGGGTATCGGCCTGCT 121866 29 100.0 32 ............................. GGCTTCGGTTTCTGGAGAGAAACCTGATGTTG 121927 29 100.0 32 ............................. TACCGGCGGCCAGGCCCGACCAGATGGTTGAG 121988 29 96.6 32 ...T......................... ATCGGGCGGACCTGCTATGTCTCCGTCCTCAT 122049 29 100.0 32 ............................. CAGTAGCCGGGGTCTCGCTCGTCGCTCACTCG 122110 29 96.6 33 ............................A GCTCATGGGTAATGCCGATGTAGAGCAGCTCCC 122172 29 96.6 32 ............................T CCCTGACCGACGCCAACGGTCGGGCACAGGAC 122233 29 100.0 32 ............................. TCCATCTGGTCCGCCGACGAGGAACGCCCGGT 122294 29 96.6 32 ............G................ CAGGCAGGGAACACCGAGCAGACCGCGGTGAA 122355 29 100.0 32 ............................. CCCGCCTCGGCAAGGTCGAGATCAAGTCCGAC 122416 29 96.6 0 ........................A.... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.5 32 GTGCTCTCCGCGCGAGCGGAGGTGGGCCG # Left flank : GCGTTCACATACTCCGGATCGTCGCGAACCGGTTCGTAGATCCCGGGGGCCTGTGCCTGAAAGGGCGGCGTGATCTTGCCGATGTCATGCAATCCCGCCCAGAACGAGACCACCGAACGCGCCTCTTCCACGCTCAACCCGAGTGCGCAGGCAAGAGCAGACCTGGTTCGGCTGCTCAGGACGGCATCCCACAGCTCCCGAAAAACCGCACTGGTATCCAGGAGATGACACACCAGCGGATACGGACTCGACAGCCCGCTTTCCTTCCCCCACAACCGGGCATCCAGCACACAACCACCCAGAACCCCAGCCTCGCCATGCTTCAGCATGCCCACAGACATAGCACCCCCCACTGACAACAGCCCCGAATAGCCCAAGCCAGCCCTTAACTACAGGACCGGCCTTACACTCGCTGCGCCACGACAACGAGACGAGACGCATGCACAACAACGCACTGCAAAGGGATGGCAAAGCGTCCGAGTAAGAGCAGGTCGCAAAGG # Right flank : GGTCCGCGATCTCAGCGACGGGGCTTCTGGGCGGTGGCGCCGACGGCTTCCTCGACCACCTTGGCGGCTTCGCGAAGGATCGCAGCGTGGTCCACAAGTTCGGGCGGCGGCGAGGACGCGCAACTGGGCAGCAACTTCGTGGCCGAAGAACTGCCGCACGTACCTGCCCTCGAAGTACGCCATCGCAGCATCCAGCGTGGTTCGGGCATCTTCAGTTCTCCTCGGGTGGCGGGCCGCCGTGCCGTACACAGCGGCCCAGGGGCGTTGGTTAGGCAGGTGGCACACGCCGTCGATCTCGCGGGGCGTCACGGTCTGGGTGAACAGGGGGACGTGAACTTGAGACCATTGTCCAGTTCGTCAATCCGTCGCTGCTCGACGACCTTCGCGAGCAGCAGAAATCCGGGAGCACTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGAACGGTGGCGAAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 123242-124422 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086103.1 Streptomyces anulatus strain YINM00001 plasmid pYINM00001, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123242 29 93.1 32 ......................C.A.... GTGGAGGTGGTCGTCGGCTACACCGGGAAAGG 123303 29 100.0 32 ............................. GCGGGGTAGTAGGAACTGCTCAGGTGTACTGG 123364 29 96.6 32 ........................A.... AAGCCCTCGTCCGTGTCTGGGTCGTGGTGCAC 123425 29 89.7 32 T..T....................A.... ATCAACCTTCCCGACGGCGGAGAGATCACGCC 123486 29 100.0 32 ............................. ATGACCATGTACGCGGCGACGGTCAGGAACTC 123547 29 93.1 32 ........A.G.................. AACGAGGCGCTGCTTCGGCTCGCCCTGCGCGA 123608 28 96.6 32 .....................-....... GTGGCTTACTCCTTCTTCACCAGGTTCAGCGG 123668 29 93.1 27 ........A.G.................. GCGCAGGCATCGGAGTTCGCGCGGATG 123724 29 96.6 32 .........A................... GTGACGAGGTTCCCCCCGGGCTCTAGGCCCCG CG,G [123728,123731] 123788 29 93.1 32 ............G...........A.... AGGCGAGCCGCTTCTACACGGGAGCCATTGTG 123849 29 100.0 32 ............................. ATCAGCACGACGCCGTGAACGTCGCAGATGCG 123910 29 86.2 32 ....G...T...G...........A.... AACAGTCCGGCGTACGAGGCCGCGGCGAGGAC 123971 29 89.7 32 ............TC..........A.... ATCACTGCCAGAGCCGTCACCACGGCGAAACT 124032 29 89.7 32 ...T........A...........A.... TCCATGAACAGGGTGCGCAGGACCTCGGGCTG 124093 29 82.8 32 .....AA.................AA..A GGATGTACGCCGAGCAGTGCCACACGCTGACC 124154 29 89.7 32 ........T...............AA... GTGCGGCTGTGGATGACGAGCTCGTCGTACAG 124215 29 89.7 28 ........T...............AA... CAGTACCAGAAGGACTTGTGCTCCCTCG 124272 29 82.8 32 AAC.....................A.T.. GAGGCTGGGGCCTACGAGCACACACCGGGTCA 124333 29 93.1 32 A.......................A.... TTCGGTCCGCACCCGCCCGGCCGCAAGGACGG 124394 29 72.4 0 ........A..CT...TA......A..GA | ========== ====== ====== ====== ============================= ================================ ================== 20 29 91.4 32 GTGCTCTCCGCGCGAGCGGAGGTGGGCCG # Left flank : CGGGGCGTCACGGTCTGGGTGAACAGGGGGACGTGAACTTGAGACCATTGTCCAGTTCGTCAATCCGTCGCTGCTCGACGACCTTCGCGAGCAGCAGAAATCCGGGAGCACTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGAACGGTGGCGAAGGCCCCCGAGCGGTTCGGTGTAGATCCCGAGCAGGCCGCGGCGCATGCCCGGTTCTCCGTCGCCACCGCCGAGGTGCACCTCGCACTCCTGGAGGACACCGTCGTCCCGCACCTGGGAGCAGGTGGGGCAGCCGACCGGACTGCTGAGTACCAGCTGCGGCTCCTCGCCGCCCCCTACGTCGAGCACAAGGACTACCCGCACGACTAGCGCTCGACCGCCAAGTCCCCTGCCAAGGTGGTGACCTCGGCTACAGGTCACCGACGAAGTCGCCCCCTCCGCCGCTCCCCCCACGAGTTCCC # Right flank : AGCAGCCCACGCTGGCGTCGAGGAGTTCCAGGTCCGGTCCGTCACCAGGTTCTGGAGCACGGCGCCGAACCCGGACGGCTCGCGCCCGCCGTTGCCGTTCACGCGAGCCCCCAGGTGGTGCAGCCGAGTTCCAGGTGCTCAAGGCCGGACAGGCGCTGCACCTGGGCGACGAACGCCCGGGTGAACAGGCGCTGCGCCGACAGCTCGCCGTACCGGTCGATGTGGTCGACGACGAGCTGGTGGTCGGCGGCGGCGCGGTTGCGCCAGTCCAGGACCTGCTCGCGGGTGAGGTCCTCGATGACGAGCTCCTGGCCGTCGTCGACGTCGGTGAACTCCGGCTCCGCAGCGGGGACGACGACGGCGGCGCGTCGCGGCGCGGGCATTGCGACCGGGGCCACCGGCGCGGCCGGGACGTCGTCGGCCGGTTGCGCGGCCGCAGCTTCGGCACGGTGGGCCTTGGCGGCGGCCTGACAGGCGCGGACCTGCTCCCACTCGTGCTC # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //