Array 1 1232973-1234769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045858.1 Pseudomonas balearica strain EC28 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1232973 29 100.0 32 ............................. GTGAAGACAAACACCTTCGGCCATTTCATTGA 1233034 29 100.0 32 ............................. GCGCTGACCTTGGCCACTGACGCAAACGCCAC 1233095 29 100.0 32 ............................. TCAAAAACGGGTACTGCCTTTGGTATGGATTA 1233156 29 100.0 32 ............................. GATGAAGTCCGCGCGCCGCTGAATGCCTGGGA 1233217 29 100.0 32 ............................. ACGCTCAGGGAAATATCTACCCGAACCCGGCA 1233278 29 100.0 32 ............................. TTGAGCAGGTCGATCTCGATGAGGACCTCACC 1233339 29 100.0 32 ............................. GTCAACACGCTGGAGGCTTCGCTCATGGGCGG 1233400 29 100.0 32 ............................. TACGCCAACCTCGAGGCGATCAACCTCGCGAC 1233461 29 100.0 32 ............................. ATGCTGATGTCCGGTATTAAATGCCTGGCCAG 1233522 29 100.0 32 ............................. GCCTCGTCGAACATGCCCCACCACGCGAGGCC 1233583 29 100.0 32 ............................. ACAACGGCTTCGTGTGACTTGCCGCCACCAGG 1233644 29 100.0 32 ............................. TCCGCGTCGAAGGCAATCCAAGCCGGGTAGGG 1233705 29 100.0 32 ............................. GTCGCGCGACTGCTGACGCTGGGGGGCGAGGC 1233766 29 100.0 32 ............................. CCATCCTGGCTATAGGCTCCAGCTCGTTGCCG 1233827 29 100.0 32 ............................. AAGACTCAGAACGCCTACGACATCCTCGTCGT 1233888 29 100.0 32 ............................. GCACCCAGCTTTCACAGCGGCAACGCCAGCAG 1233949 29 100.0 32 ............................. AAGCCAGCGGAAAACACCGCAGTTGCGCACTC 1234010 29 100.0 32 ............................. ACCGCGTCAATGCGATGAACGCCATGTTCCTG 1234071 29 100.0 32 ............................. GGGTCATATACGGTGGACGAGGTCGAGCACAG 1234132 29 100.0 32 ............................. GCCGGGCGCTGCCTGCTGCTGCTGGGCAACGT 1234193 29 100.0 32 ............................. CTCTCCGACCAGTACAAGTCGCTGAAAGAGCA 1234254 29 96.6 32 .....................G....... GCACCGCTGCAGCCTGCAATCGGAGCAGCGCA 1234315 29 96.6 32 .....................G....... GCACCGCTGCAGCCTGCAATCGGAGCAGCGCA 1234376 29 100.0 32 ............................. TCGTTGGAGCAATCCACGCTGCTGCGCCTGCT 1234437 29 100.0 32 ............................. GCCCGCATCACGGTTGTTGGTGCAGGGGGCGG 1234498 29 100.0 32 ............................. TGGATCGCATCTATGGATTCAGGAGGGTGGCA 1234559 29 100.0 32 ............................. GAATCTACCGATCCGACAGCCTCTCGGAAGTG 1234620 29 100.0 32 ............................. ACCATCTGGAACGTCTGCGCGCCAGTGGTCAA 1234681 29 100.0 32 ............................. TTCAACAAGGCTATGCAAGGCCTGGAGGATTC 1234742 28 79.3 0 ............-.T.........GCGG. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.1 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TGGGTGGCGCCGGCTACGTCGAGGAAACCATCCTGCCGCGCCTCTACCGCGAGGCGCCGGTCAACTCCATCTGGGAGGGTTCGGGTAACGTGCAATGCCTGGACGTGCTGCGCGCACTGTCGAAGGAGGCCGGTGTGCTCGACGTCTTCTTCGCCGAACTCGGCGACGGCCAGGGCGACCGCGATCTGGCGGCGCATATCGCCCGCCTCAAGCGCGACCTGCACGACACCGACGACATCCAATACCGCGCCCGCCAGCTCACCGAAGACATGGCCATCGCACTGCAGGCCAAGCTACTGCTCGAAGCCGGCAACAGCGCCGTGAGCGACGCCTTCATCGCCAGCCGCCTGGCCACCAGCCGCCGTGCCTACGGCACCCTGCCGCGCGGCATCGCACTGCCGCCAATCCTCGACCGCTCCAGCCCGGACTGACCGACCGGCAGGCGCGGTAGATTGCGGCGATAGGGATTTTCCATTGCCCATCAGACGCTTACGATTGGC # Right flank : GATTATCTAGATCTCGCTGGTTAGGCCTGTTTGGCTGAACAGGTAGTTCGCACTCTCGGCAAGCCTGCGTGCCTTTTTTCCACGACGGTTAGACATAACCCGATTCGCTACATATCGAGTCGTCGGTAGGTATGCGCTTGGCTTGCCGCTGGGACAGACAATCACTGCGTACGCGGTATGTTGCGACCCCACATCAGTCGCTAGCGCAGCCTGCGTAAACCTGTCGCAGCGAAAACTTTACCTGTCCGCCCATACAGGCCTTTTAAGTATGACCTGATGCATGATTAGCTTTGGATGGCTATTTGATATTGCGAGGCGGCGCATGCACAGGACGTGCTCCCGGAAGTTTTCAGCACTGTCCGGCCCAACGAGAACGCTCTGGGCCAAGAGTGGTGAAATGACCGGCCATGGTTTGTTGGCCCATCTGCTCGACGTGGCGGCTGTCGTCGAGACGCTGCTGGCGCTGGAGCCGCCTGCTTCCATGCGCTGGGCTGCGCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1244406-1248646 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045858.1 Pseudomonas balearica strain EC28 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1244406 29 100.0 32 ............................. GCCCAGTGCGCGCGCCTTGCCGTTCGCCGCAC 1244467 29 100.0 32 ............................. GCCCAGCGCTGGTGGAGGTCGTTCCAGTCCAC 1244528 29 100.0 32 ............................. TTCAGCCCGCTCTGCAGGTACACACTCGCCCG 1244589 29 100.0 32 ............................. CGCTTCCTGCTGGTGGCGCGCCACGTCGAGAA 1244650 29 100.0 32 ............................. TTCGAAATCGCTCGTACCGATGAAGGCTACCG 1244711 29 100.0 32 ............................. GGCGCGCGCTACGAGCTGCGCCTCGAGTACCC 1244772 29 100.0 32 ............................. AGCATCCGCCTGGAGATCGCCCGTACCGACGA 1244833 29 100.0 32 ............................. CCCTTTGCCGTTTAATCCTCGACCTTTGATTT 1244894 29 100.0 32 ............................. CCCGATCATCCGGCCATCAAGGCTACCTGGAT 1244955 29 100.0 32 ............................. CGTTCGCAGCCCATCGGCTGCTTGCGGTTCTC 1245016 29 100.0 32 ............................. GCGCTGTGGCCTTCCGTGCCGGTGTCCCGCAC 1245077 29 100.0 32 ............................. GCATGGGGCCGGAAACAAGAAAGCCCCGCACT 1245138 29 100.0 32 ............................. TTCAATCCAGCAGGAGCCGCAGAGGTGGTCAT 1245199 29 100.0 32 ............................. ACCTATCGCGCTTGGGCGAACTACGCGATGAA 1245260 29 100.0 32 ............................. CCTGTCGCGACCAGCACCCCGCCGGCGCAGCC 1245321 29 100.0 33 ............................. AACGTTTTGATGGCCTGAATCGACGCGCGCGTA 1245383 29 100.0 32 ............................. GCGGCGCGCCTGCTGTTCCCGCGCTGCTACTT 1245444 29 100.0 32 ............................. ACCTGTCGGATGCGCGCTACCTGCGCCGGCAA 1245505 29 100.0 32 ............................. TATCGAGTCTGGGTTGAGAACGCCTATTACTG 1245566 29 100.0 32 ............................. TTGCCACGAGAGGTAGAAATAACAGTTGGAGG 1245627 29 100.0 32 ............................. CAGGCTGACTTCCGCCTCGTTGCAGTAGAGCA 1245688 29 100.0 32 ............................. GAGATGGCGGCGCAGGGTGAATTGACGGCTGA 1245749 29 100.0 32 ............................. TTCAGAATTGTTGGTCCGATTACCGTCAGGCG 1245810 29 100.0 32 ............................. GCGGTGGAGCAGGGCAGGCCTGTCTACGCCAA 1245871 29 96.6 32 ............................C GGCCGTAGTAGGCCATTCGACTCAGTGAATCC 1245932 29 100.0 33 ............................. TGGTGCGCGTGTTGAAGTTCCGGTTACTGGCAA 1245994 29 100.0 32 ............................. CAACCAGTCGCGGGTAGTCGTCGAGGATCCAC 1246055 29 100.0 32 ............................. ACCCAGGAACGTTGTCACTGATGACGGGAGCC 1246116 29 100.0 32 ............................. CTGACGGTTCTCATGGGCGGAACTCCAAACGC 1246177 29 100.0 32 ............................. GCGATTCTTGAGTGGGTATTTGGCATCCTCGC 1246238 29 100.0 32 ............................. CCGCGCGACCTACGCAAACCTTTATGCGAAGA 1246299 29 100.0 32 ............................. GCTGCAGCCGCTGAGCCGCCCGCCACCGACGC 1246360 29 100.0 32 ............................. ATCGTCGAGGGCACCACCTTCGGCTTCGAGCT 1246421 29 100.0 32 ............................. GCCAAGCGCTTCACGAACTTCTCTTCGTTGCG 1246482 29 100.0 32 ............................. ATCCTGGCATCTGGCATGTTCTCCGGCATGAC 1246543 29 100.0 32 ............................. CAGAGGGCTGCGACTGGCAACATAGGTCGCAG 1246604 29 100.0 32 ............................. TTGTAGAACCTCACGAACTCGTCATCGTCCGG 1246665 29 100.0 32 ............................. GCGGTAATCGGCACCGATCTGCTGACCGGCGA 1246726 29 100.0 32 ............................. GCCATTCGCACGGCGCGGAGATCATCGACGGG 1246787 29 100.0 32 ............................. GCGCTGAAGCAGGCCGTCGACAAGGCGCTGGT 1246848 29 100.0 33 ............................. CGTGATGACGAGTGGTGGGATTCCCGCCTCGTG 1246910 29 100.0 32 ............................. CTCAGCGGGATTCGTCTCACGCCAGATGCTGC 1246971 29 100.0 32 ............................. GCGCCGCAGCTGGTCAGCCACAGGCCCACCAA 1247032 29 100.0 32 ............................. CGGTACGACCCGTTCGGCTACGACGGCCTTAG 1247093 29 100.0 32 ............................. CCGCGCGCATAGAGCGGCAATGGGATAACCAA 1247154 29 100.0 32 ............................. GAGGCAGGCATGGGGCCGGAATAGGGTTTCGG 1247215 29 100.0 32 ............................. ACCGCTGACCTGCATGGGCCGGCGCTGGATTT 1247276 29 100.0 32 ............................. CCATCATCGATTCTCGGTCCGGCAGCTCAACC 1247337 29 100.0 32 ............................. CATTCTCTACCTCCGTGTTCTCGCCGAGAATG 1247398 29 100.0 32 ............................. CCATGTTCATGCACTGCGCGTACATCGTCTTG 1247459 29 100.0 32 ............................. GCCGTCCATCGTGTGGCCGCCGAGTTCGGCGA 1247520 29 100.0 32 ............................. TCAACCGCGAGCTGAGCCTCTACCGCCGTGCC 1247581 29 100.0 32 ............................. GAAAAAGACCCCGTAGAGGGCAACGAAAACGG 1247642 29 100.0 32 ............................. CTCAGAGCATGGCGGAAAACTCCGTTGACCTG 1247703 29 100.0 32 ............................. AATAGAACCGCCGATATCATCGGGAGAATCTC 1247764 29 100.0 32 ............................. CACTACGAAGACACGTTGGCAGATGGGACTTG 1247825 29 100.0 32 ............................. TGCTGGATCGGGAAAATCGTCTGCGAGCGAGG 1247886 29 100.0 32 ............................. CCGTTTCCGTCCCAGGCTCGCCGCGCGGCGTA 1247947 29 100.0 32 ............................. GATGGCAGCTTCATCGACCTCGACATGAAGTA 1248008 29 100.0 32 ............................. ACCGGCCTCACATGCGCGTGCGATCCGCCTAT 1248069 29 100.0 32 ............................. CAAAGCGCAGCGGCGTGACGGTCAGGGAGATG 1248130 29 100.0 32 ............................. GCAATCGTCCAGCCGCATGCCGGCAGGCAGCG 1248191 29 100.0 32 ............................. GCCACCTATACAGCGACCCGCGCCAACGCTGG 1248252 29 100.0 32 ............................. GGTCCACCACGCCGCTGCGAATGAGTGTCCAG 1248313 29 100.0 32 ............................. CCAACAGGGTTGGCTGTCGCGTCGATATCATC 1248374 29 100.0 32 ............................. CATGTACGGGCCGGCCAATCGCGACGGTAGCG 1248435 29 100.0 32 ............................. GCAGCTATCAGCACAGGGCGCTGCAGAGCGTG 1248496 29 100.0 32 ............................. CCGCTGAGCGCCTGCATCAGGTGTGCGGCGCC 1248557 29 100.0 32 ............................. CCGGTATTCGAGTTCAAGCACCGCGATAAGGA 1248618 29 89.7 0 ..........................TTC | ========== ====== ====== ====== ============================= ================================= ================== 70 29 99.8 32 GCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGGGCGCATCATCCCGCTGATCGAGGAAGTACTCGCCGCTGGGGGCATCAACCCGCCCGAAGCGCCGCCAGAATCCGTTCCGCCGGCCATTCCCAATCCGGACAGCCACGGCGACGTCGGCCACAGGGCGAAGTAATGACCTTTCTCGTCGTCGTTACCGAAAACGTACCGCCGCGCCTGCGCGGGCGGCTGGCGATCTGGCTGCTGGAAGTTCGGGCAGGTGTCTACATCGGCGATGTCTCGAAGCGCACCCGCGAGATGATCTGGCAGCACCTCGAAGCCGGATTCGAGGACGGCAATGTCGTCATGGCCTGGGCCAGCAAGAGTGAATCCGGCTACGACTTCCAAACGCTCGGCCCCAACCGCCGCGAACCCATCGACTACGACGGCCTTAGATTGGTCGCTTTCCAGCCGCCGCAACCCCCTGATCTTTAACAAAAGAACTCGGTAGATTTTTCGTGGCCGATTTTCTTCTTGTAGGACAATCGGTTACGTTTGGT # Right flank : CAAGAGGCTGGCGCCCCCGTGTCTACCTCGAGCCGCGGGCGTGTCCATGGCGGAGCGAGGCTCGGTGTAGCGTTTCCATTGGCCGCCCGGAGGCATCGGCCGCGCGGTGGTGCTGGCGCGGCTACACTCGATGCGCTGGGCGGAAAACGCTGCCTCGTGGGCGTTCTTGTCCGCGGTAATTTTTCTGCCTGGCGTCTTGTGCTTAGCTGCCGGTGACGGCGTGCTCGCCGGGGCTCAGCGGGACGGTCGACCTTGGTATAGCTGTCGAAATGGCCCGGGTCCCTAGAATGGGGTTGTGATCGGCGCGTTCCGCCAGGGGGCGGAGCGAACCTTTAAAGGCGAGCCGGGCAGGTCTGCCGCGGCACTCGGCCATACGCCGTCAGGTTATGCAAAGGGTATCGAGAACCGACCACGGACGAATTCAGAACAATTTCAGAGGTGTTGCATGGCAACGGATTTGAGCAAGTACATTCGCAATGCTGCGTTCATCGACAAGGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //