Array 1 185995-186633 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSR02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0384 NODE_3_length_419738_cov_54.919554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185995 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 186056 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 186117 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 186178 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 186240 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 186301 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 186362 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 186423 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 186484 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 186545 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 186606 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203385-206159 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSR02000003.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0384 NODE_3_length_419738_cov_54.919554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 203385 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 203446 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 203507 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 203568 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 203629 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 203690 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 203751 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 203812 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 203873 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 203934 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 203995 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 204056 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 204117 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 204178 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 204239 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 204300 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 204361 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 204422 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 204483 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 204544 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 204605 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 204666 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 204727 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 204788 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 204849 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 204910 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 204971 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 205032 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 205093 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 205154 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 205215 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 205276 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 205337 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 205398 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 205459 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 205520 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 205581 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 205642 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 205703 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 205764 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 205825 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 205886 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 205947 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 206008 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 206069 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 206130 29 96.6 0 ............T................ | A [206157] ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //