Array 1 88251-89804 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMW01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS22 NODE_6_length_213549_cov_16.969982, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88251 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88312 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88373 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 88434 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88495 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88556 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88617 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88678 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88739 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88800 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88861 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88922 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 88983 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89044 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89105 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89166 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 89227 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89289 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89350 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89411 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89472 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89533 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89594 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89655 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89716 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89777 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105937-107413 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHMW01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain RS22 NODE_6_length_213549_cov_16.969982, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 105937 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 105998 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106060 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106121 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106182 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106243 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106304 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106365 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106426 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106487 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106548 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106609 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106670 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106732 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106835 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106896 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106957 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107018 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107079 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107140 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107201 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107262 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107323 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107384 29 96.6 0 A............................ | A [107410] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //