Array 1 288203-288950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003328.1 Pasteurella multocida subsp. multocida str. HB03 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 288203 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 288263 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 288323 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 288383 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 288443 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 288503 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 288563 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 288623 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 288683 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 288743 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 288803 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 288863 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 288923 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.4 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTATCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1550408-1549121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003328.1 Pasteurella multocida subsp. multocida str. HB03 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1550407 28 100.0 32 ............................ CACTCATACCGGTTGCACAAGCCAGAATCACA 1550347 28 100.0 32 ............................ TTACCTTCCGTCATTGTTGAGCCTCCGCTAGT 1550287 28 100.0 32 ............................ GCTACAAGCAAGCGACGATAGTTTTAATTTTA 1550227 28 100.0 32 ............................ AAAGCCTATGAACACACAACCCTTGCACAAGT 1550167 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 1550107 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 1550047 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 1549987 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 1549927 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 1549867 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 1549807 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 1549747 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 1549687 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 1549627 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 1549567 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 1549507 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 1549447 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1549387 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1549327 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1549267 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1549207 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1549147 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //