Array 1 618742-618901 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019845.1 Leptotrichia trevisanii strain JMUB4039 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 618742 24 100.0 43 ........................ TGATTCAAGGAACTCATAAGACGGGATATAAGTTTTAGTCCCC 618809 24 100.0 45 ........................ AATAATATTCTAGAAATGTCATATTGCACATATGTTTTAGTCCCC 618878 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================= ================== 3 24 100.0 44 TTCATTTTTGGGGTACTCTAAATC # Left flank : TCTGCCTCCTAAAAACTTTAAGATGGTAAACCGCTACGGATTTTATTCAAGGCATATTTCTGGCAGGCTTAAAGAGGCAATTGATGCTTTCAGGAAAAACATTGCCGTGTCAAGATATTCATTTTATCAAAGGCAGATGTACAGGACTTTCGGGATGAATCCTTTTACTGTCCAGCATGCAAGGTTAAAATGATTGTATGGGAATTTTATCATTACAGATATCCGCCCCTCAAAAAATACTATTAATATTTTATTAATCCAACTAGGTTGGATATTTTGTCGTAGACATTTGTATATTTATTTGACAAAAGAAGAGGAAAAGAGGCTGACGCCTCTTTTAAAATTATCAAATATATCAGTAAATACCTAAAAAATATGAATTTAATTTCCTTATAAATAAACAAAAAAGAGCTTTACAGCTCTTTATTAAAATCAATATTTTTATTTTGTTAACGAATTTAAACAACATTAAATTTAGAAACCTATATATTTCAGTACTT # Right flank : CCATCGAATTATGGGATAATATTTTATATTTTATTTACTTGTTTATTTAGAGTGTGCCTGAAAAAATTAAATGTATTTTAATAGTTTCCAGACACACTCTAGCGATTTAGATTACCCCGTTAATTTATTTTATCATATTTTTTTGATAATGCAAACTAATATTCCAAAATTTTTGCTTCTTTTTTTATGATTTTTTCTCTGATACTTATTTCTCCAGATATGATTTTCTTTTTTGAACTAAATTACTTTACATTTTTTAGTTTTCAGATTTTTTTTCTTTCATTTTATACTCAAACATAACTTTCACAAGTTTACATAATTCTTTTGAATTTCTATAGGTTTTTATAGGTTCTTTCTTTTTATCATTATCTTTTAGTTTCAGTTTTTTCAAATGTACAACTTCTTCTGATTTTAAACTTTCTATTCTTATCTTTTTATCCTTTTCTATCTTAAATGTTACCACAAAACCATATTCCTTTAATATATCCACTATTGATTTC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCATTTTTGGGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1101344-1100014 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019845.1 Leptotrichia trevisanii strain JMUB4039 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1101343 29 100.0 36 ............................. TACTTTTTATTTTTCAAATATTTTTCTTCTTATTTG 1101278 29 100.0 36 ............................. TGCCATACTTGTAGGGATTGCTTATTTGTAATCATT 1101213 29 100.0 36 ............................. TGCCATACTTGTAGGGATTGCTTATTTGTAATCATT 1101148 29 100.0 35 ............................. GTAATAGATGATGGGATTAACAGCATGACAACATC 1101084 29 100.0 36 ............................. AATTTATTATAATCAATTTTTTCTTGTTTTTTAACC 1101019 29 100.0 36 ............................. TTAAATTACTTAAATCAGCAACATCATTTTTATCTT 1100954 29 100.0 36 ............................. TTGTAATTCTGTTGCTATGTTACATTATTGTTTGCA 1100889 29 100.0 37 ............................. TTATAATAAGTAATTAGTATATTCTATATACTATTAA 1100823 29 100.0 36 ............................. TTATTTCACTCCATTCTTTTCTTAAAATAAGTCTTT 1100758 29 100.0 37 ............................. TTTTCATATTTTAATATCATACTAGAATAAGATTGGA 1100692 29 100.0 34 ............................. ATTTGATTATCCAATGCTTTTTTCCAAGCCTTGC 1100629 29 100.0 36 ............................. TTTTTAAACATTTTACCGCCACAGGTACACTCTAAT 1100564 29 100.0 36 ............................. TTTGCTGTGCCGACTTCTGATATAGAACTTTTGAAA 1100499 29 100.0 36 ............................. TTTTTAAACATTTTACCGCCACAGGTACACTCTAAT 1100434 29 100.0 37 ............................. TTTGCAAGATTTATTATATCACTAATTGAATTAGTAT 1100368 29 100.0 36 ............................. TTTTGTTTGATTGTTTCAAAGTTTTTGCAATATTTC 1100303 29 100.0 36 ............................. ATAACAATTACTGTTGTAGGTTTGGATAAGATATTA 1100238 29 100.0 37 ............................. CAGAAATAAATCAATTATTTATTCAAAGTATTGCTAA 1100172 29 100.0 37 ............................. TACATAAAGAGAATAGCCGTTGCTGGAATGACAATGG 1100106 29 100.0 36 ............................. ATTTTGGCTCAAAAAATAGCAGAATCAATGGGAGTG 1100041 28 86.2 0 ..........A...T........-....G | ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.3 36 ATTTTAATAGCACAATTTGTATTGTAAAT # Left flank : GCTGACCATGTATAATTTTTCTGTTTTGCAGATCCAAAAAATTCTTCAAAAATTTCATTATCACATTTTTTCAGTCCTGTTTTTAGGACACATAAAATTTTTGATCTCCAATTTATAGGAAAGCTGTTACCTTCTGTTAATTCAATATTAATCTTAAATCTCATTTTCTTATTGTACCTTTCTTTCCATTATTTTTTTCTTTGAAATATAATAATATATTATATCCTATTTTTTATAAAAGTAAATACTTATATAATAAACTTTTATTATTATTTAATAGATAATTTTTTTAGATATTAAATATTATTAATCTGTCGATGCCCAATAACTAAAAAATCCCTGTATACCGACAGATTCCTAAAATTACTGATTTTTACTGATTTTCTTAAATATTTTATTTTGAAAATAAAAAATCAGCTTTTAAAATTTTTGGAAAAAATTAGGTATCGACAAAATTGTGAAAAAATGATATTATATTTAGGGTAACTAATAATGATATG # Right flank : TGTTTGAAGATATATTTAGTTATATATTTTAATAACACAAATATTCCATATTTAAGAAGCGGAGAATGTCTGCTCTGAAGGAAATATCACAAAGTAAGATGATTCAAAAAAGTGATCAAAAAAGTTTTATTATGATATTTAATGAATTGCCTCTAATTTTTTTTACTCTGTCGGCATCTTTTTTTATAATAGACAAAAAACATAATAAATGGTATAATAAGTAAGTTTTAATAAAATAAAATATTGAAATTTTAGGAGTGAGAAAAATAGTTATAGATAAAAGGAAAAGTGTAATGCTTGTTATGACTTGTATTCTCTTTATGATGACTTATTCGAGCCTTTTGGGGACACCTAGTTTTAGCCGTAAATTAAGTGTTTTTGTGGATGAGAATAATTTGAGCCATGAGGATATTCGGGATTTGATTGTGAAAATTAATCAGATTGAAAGCGTAAATAACAGACGATTGACACAGGAACTGAAAAAAATTGGGAAACGTAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATAGCACAATTTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 1110391-1111459 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019845.1 Leptotrichia trevisanii strain JMUB4039 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1110391 29 100.0 36 ............................. TATATTTATAAATATCTTGCTGTTTAAAAATACTGG 1110456 29 100.0 36 ............................. TTTCATTATTCAAGGCCCGTATATCGTTTTTAAGAT 1110521 29 100.0 36 ............................. ATGTTTATAGTGCTAACTGATTTGAACGTGAATGAA 1110586 29 100.0 36 ............................. TTATCTGTAAACGACAAGGTTTTGGTAGCATTTTGT 1110651 29 100.0 36 ............................. ACATTTCGTGTTATAATATTATCGCCAAAACAACTT 1110716 29 100.0 37 ............................. GAATGATTTGCAAATTCACTTGCCAAGTCAATTCCAG 1110782 29 100.0 35 ............................. TCTTTAATATATTTTCTTATTAATTTTGAAATACT 1110846 29 100.0 36 ............................. AATGTCAATAAAAATTTCGTTTTAGATAGATTTGAA 1110911 29 100.0 36 ............................. CCTTAATTTCATAATTTACTATTTTAAATTTATTTT 1110976 29 100.0 36 ............................. TATATAAGGGACGCCTATTTAATAAAATACGGAAAT 1111041 29 100.0 36 ............................. TAATTTTATGGGAAGAAAAAACAGGTAGACGTGAAC 1111106 29 100.0 36 ............................. ACTTTCAACACTTTTCATTTTTACCTCCTAATCCAA 1111171 29 100.0 36 ............................. TGCTGAATACTTCTTAAAAATTTTGACATAGCAACA 1111236 29 100.0 36 ............................. GCTAATGCTCTTAACTCCTCGGTAGTAAGTCCTGAA 1111301 29 100.0 36 ............................. TGCGTAGCGGACTAAGAACTGCTACACTAGATGTAG 1111366 29 100.0 36 ............................. AATTTTCTTTAGACAGCATTTCGTACATTTCCTCTA 1111431 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 17 29 100.0 36 ATTTTAATAGCACAATTTGTATTGTAAAT # Left flank : TAAAATATGGTGGTAGTATGTATATAATTTTAGTTTATGACATCCTAACAGATGACAATGGCCCAAGAATTTCTCGAAATGTATTTAAAATTTGCAAAAAGTACTTAACAAATGTTCAAAAATCAGTATTTGAAGGAGAAATAACCCCAGTTTTATTAAAAAAATTAAATCTCGAACTAAAACGATACATTCGCAAGGACAAAGACTCATTAATAATTTTCAAATCACGTCAAGAAAAATGGCTAGAAAAAGAATTTTGGGGAATAGAAGACGATAAAACCTCAAATTTCTTTTAATAATTCCAGAAAAATCTGTCGATGTCCAATAACTAAAAAATCTCTGTATACCGACAGATTCCTAAAATTACTGATTTTTACTGATTTTCTTAAATATTTTATTTTGAAAATAAAAAATCATCTTTTAAAATTTTTGGAAAAAATTAGGTATCGACAAAATTGTGAAAAAATGATATTATATTTAGGGTAACCAATAATGATATG # Right flank : TTACATTTTGCCCTTGACTATTGCAAGCATAATTTGTAAATTGTAAAATATTAATCAGTAAAATAGTTGCACTTTTGTTAATAAAATAAGGCTATTTTTAGTTTACAAACATTTTTTCTTGTTTATTTTATTTGAAATTCTAAGAAAAATAGGTTAAAATATAATGATAAAAAGAATAGTAAAATTTAAGTAAGGGGGAATGCGGATGAAAAAAAATGTAGCAGCATTTTTTGATATAGATGGAACAATTTATAGGGATTCTTTGCTGATTGAACATTTCAAGATGCTTGTGCAGTATGAATATATTGATATGATGACTTGGGAAGGGAAGGTTAAGGAGAAATTTTCCAAGTGGGAAAACAGGACTGGGGATTATGACGACTATCTGGATGAGCTTGTACAGACTTATATGGAGGCATTAAAGAATTTTAGCAAGGAGGATATGGATTTTATTGCTAAAAGAGTGATGAAACTCAAAGGGGACAAAGTTTACCGATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAATAGCACAATTTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 1297505-1297763 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019845.1 Leptotrichia trevisanii strain JMUB4039 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1297505 37 100.0 35 ..................................... TCTCCTATAAAGTTGTACTTAAAGGAAGGAGAGTG 1297577 37 100.0 39 ..................................... AATTAATAATCGCACCTTCTTGTACTAATGTTCTTAATA 1297653 37 100.0 37 ..................................... AATTTTAATATCCAGCATAGACAACAGAAGTCTCAGT 1297727 37 91.9 0 .............................T..A...A | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 98.0 37 GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Left flank : ATAATTGTAAAAAAAGGCGAATTAGCAAAAATAAATAAAGGAATGTCACAAAAAGGCTTGGCTGAAAGATGTACTTATACAGTAAAAGAATTTCCAAAAAGTAATCTTTCAAAAAAGGCTGAAGAAGCCTTGAATAAGATATTTTCATCTATGAAATAAAATTATTGAAAGCAGATTTGAAGAAGGATACTGAATTACAAAATTTGTTTTTTGGTATCTTTTTATTTAGGAGAATAAATTTTGATAATAATTTTTTAAAAAAGTTTTGAAAAATCAAAAAAATGTGGTACAATAAGTTCGTGGTAAAAATTCCTACCACTACTAAAAATTAAAAAAGCAGAGAAAAACCTATTCAAACTCAATAGACATGCACGTTAGGAGTTACGGAAAATGCCAAAAAAACAGCAAAAAATGATAAAAATTAAGCAAAAAAATGCGATTTTAATGTCTGAAAAAATTTCTGTAATACCGATTAATAAAGGATTTTCTCAAAAGTACGG # Right flank : AACAACAACTTTTTTATAAGGTTGTTTTTTTGTTTGGAAATAAAATAGGGGGTTGAAAAAAAAGCGAAAATGTGTTATTATAGTTACAGAAAATAATTTTAGGTAGAGAGTGGGTTAGCCCACTCTTTAGTTTTAGATATGAGGTGTAATTTTATGGAACAGATTTTAGATGAGTTTGAGAAGAAAATCGAATCGCATTTAAAGCGAATGAATCTGGAATTGGCAGATTTGGAATATGTGAGGGATGGGGGATATAATTATTTGAGAGTGTATGTGGAGAAACTGGATGGAACTACTACGCTTGATGATTGTATTGATTTTAGCCGTGAGATTGACGGGATTGCGGATGACTTGATTGAGGAGAAGTTTTTTCTGGAGGTTTCGACACCTGGGGTAGAGCGTAGATTGAGAAAGCCTAAGGATTTTGTGAGATTTTTGGGAGAGAGGATTAATGTTCAAACTAAAAGTAATATTGAAGGGGCGAAGAGATTTTTAGGAAA # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 5 1534578-1533795 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019845.1 Leptotrichia trevisanii strain JMUB4039 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1534577 37 100.0 37 ..................................... AGGAATTATAGGAAGAGATATAGTATCTTTCATCATA 1534503 37 100.0 35 ..................................... TTACTAAATAATTTCTTATAACCATTCTCGTAAGG 1534431 37 100.0 38 ..................................... GATCTCCTATAAGTTCTATGGAAACTGATGCTAATAAA 1534356 37 100.0 37 ..................................... CATGACGACTCTTACCGTAACAAAAGTATAAAAATGG 1534282 37 100.0 37 ..................................... CTCTATCATCTCCCATTAATATATATGGACGTATCAT 1534208 37 100.0 40 ..................................... CATAAAAAGACTATTTTTATAGAAGTTACTAAGTTAGATA 1534131 37 100.0 38 ..................................... TTTGGAAGTTCTGTTGGGTATGAGAGAGGACTTAAAAT 1534056 37 100.0 38 ..................................... GGAAATAAAAATGAGTACTTACGGAAAGAAATTGAATG 1533981 37 100.0 38 ..................................... ATTAGATTAACTTTTATATCATTCATAACTTCATGATG 1533906 37 94.6 38 ..................G.....T............ GATAATCGTGTAATTTATTTAAATAGATTATCTAGTAT 1533831 37 81.1 0 ..................G.....T..AT..AA...A | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 97.8 38 GTAAAAGTAGTATATCCATTAAAACAAGGATTGAAAC # Left flank : TCTAGGATTTGAAGAAGAATTTGAAGTGAAGAATGTAAATCCAATTGTGTTAAATGGTTTAAATGTGGAAACAACACAGCACGATTTTTTCTCGAAAAAATCTACGAATTATGAGAAAGCACTGGAAGTGGTGCATTTGCATGATGATGATTTTAAGTTTGATGAAGAAGTGAATGCGGATGAATTGATTTAAGTTTGGAAACGTACGAAAATGAGAGCTTTAATTACTGGTTCTCATTTTTTTGAAAAAATATCCAAAAAGATTTTGAAAAAAGAGAAAAATGTGGTAAAATAAGTTTGTAGAAAAAATTCCTGCCATTATAAGAAATGAAAAAAAGGAAAGAAAATCCACTCAAAGCCAATAAAAATGCACGTTAGGAGTTACGGAAAATGCTAAAAAGACGTCAAAAAATGATAAAAATCAGTCAAATAATCTCAATTTTAATGTCTGAAAAAATTGCTGTAACACTTATAAATAAAGGATTTTCGCAAAAGTACGG # Right flank : TTAAAAAATATTTAATCACAGTTAAGTTATAAAACTGTGATTTTTTTTTGGAAATAAGTTAATTAGTAAAAAAAATAAGTTATAAGAATTAGATATAATTATTGTGTAAAGAATGAGAGAGAAAAATTTTTAAAATTTAAAAATAAAAAGGTTATCTTTAGGAAAAAATAGGTTAGAGATAAAAGGTATAATGATTTTGTAAATTAGAAAGAGAATAAAAAAGATGGAGTGTGATTGATTATGACGAGTTTTAAATATTATAGAAAAACAGATATAGAAAAAAAATTAGAAAAAGCAAGATTTATGCCTTTGGACGTCATGATAACAGGAGTAACAGGAGCAGGAAAATCAACAACATTGAATACAATTTTTAAGAAAAATGTAGCAACAGTGGGTAATGGAGTGGATCCAGAAACAATAGATTTAGAATTTTATTCGTTAAATGATGTATTTAGATTGTGGGATACTCCAGGATTGGGAGATGGTATTAAAAATGATGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAAGTAGTATATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 6 2503100-2502766 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019845.1 Leptotrichia trevisanii strain JMUB4039 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2503099 37 100.0 38 ..................................... TTTATATTAAAATCACTTTTGTCAGAACCTAATTCACG 2503024 37 100.0 38 ..................................... GATGTTATCACAGGAATGATAAAAGCAAACTTGCCAAG 2502949 37 100.0 37 ..................................... AATCTCCTAGAAGAGGTAATACTATGATTAATATATT 2502875 37 100.0 37 ..................................... ATAATATACTGTGTTTTATTTTTTACGTTGAACTTTT 2502801 36 91.9 0 ........................T.......-...T | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.4 38 GTTAAAATAGAGTATCCATTAAAACAAGGATTGAAAC # Left flank : GTTGCTCAGAATATTAAAAAAGGAACAGAAGATGTTTTAGGTAAAACTGTGGAAGGTGCAAAAGATTTAGCAGATAAAGCTGCAAATAATAAAATTGTACAAGATGTGAAAAAAGGCGCTGAAGAAGCAGTAGACAAAACAGTAGAAGGAGCTAAGGGATTAGCAGATAAAGTTACTGGAATGTTCAAAAAATAGTAAAAACAAAAATGCAATAAAAAAGGTTAGCTGGAGTATCAGTTTTGGTACTCCTTTTTTAAAAAAAACTTTGAAAAATCAAAAAAATGTGGTAAAATAAATTTGTGGTAAAAATTCCTGCCGCTACCAAAAATAATAAAACTAGAGAAAAATCTATTTAAAGCCACTAAAAATGCAGGCTAGGAGTTACGGAAAATGCTAAAAAAACATCAAAAAATAGCAAAAATTAAGCAAAAAAATGCGATTTTAATGTCTGAAAAAAATTCTGTAATACCGATAAATAAAGGGTTTTCTCAAAAATACGG # Right flank : TATTTGTTAAAAACAACAACTTTTATATAAGGTTGTTTTTTTATTTAAAAAAAAGATTTAAATACTTTACTACATCAAATTTTTAAAATATTTTGTTATTTTTAGGAAAATTTGATATAATTTATTCAAAAGGAACTAAATTTGGATGATGAATTTTAGAAATGAATTAGAAACATACGATTTTGGAAAGGAAGTTTTGTGAAAATAGTAAAAAATTATTATAACAGATTTAAGGTCTTAAATCCTGAATATTCAGAAATAAAACTGGGGATTATTGTTGCAATTATTATTTATTTTATTGCAAAGATTTTTTTTGCAGTGGAAATCTCAAGGGATATGATAATTTCACTTGTGGTTTTTGTAATATCAATGACTCTTCACGAGGTGGCACATGGATATGTAGCTTATAAATTTGGTGATGATACTGCCAAAAGAGAGGGTAGAATCACACTAAATCCACTAAAACATATTGATTTGACGGGAATAATCCTGCCAATTCT # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATAGAGTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //