Array 1 108118-106454 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMB01000054.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N418 SEEHN418_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108117 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 108056 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107995 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107934 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107867 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107806 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107745 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107684 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107623 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107562 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107501 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107440 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107379 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107318 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107257 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 107196 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107135 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107074 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107013 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106910 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106849 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106788 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106727 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106666 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106605 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106544 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106483 29 96.6 0 A............................ | A [106456] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163391-164516 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMB01000081.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N418 SEEHN418_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163391 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 163452 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 163513 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 163574 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 163635 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 163696 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 163757 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 163818 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 163879 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 163940 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 164001 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 164062 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 164123 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 164184 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 164245 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 164306 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 164367 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 164428 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 164489 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //