Array 1 21332-22686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABALK010000020.1 Neisseria meningitidis strain 108253 NODE_20_length_39447_cov_33.823775, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21332 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 21398 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 21464 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 21530 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 21596 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 21662 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 21728 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 21794 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 21860 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 21926 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 21992 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 22058 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 22124 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 22190 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 22256 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 22321 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 22387 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 22453 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 22519 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 22585 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 22651 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //