Array 1 42134-50172 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSXB01000001.1 Rathayibacter toxicus strain FH183 FH183_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42134 29 100.0 32 ............................. TCTGCGCACTGGGCCATTACTGGGCAGCGTCT 42195 29 100.0 32 ............................. TAACCAACCGACCACCATACATAGATTGGACC 42256 29 100.0 32 ............................. ATCTGGTTGGGTCGCCTGGTTTTGGGCGCGTT 42317 29 96.6 32 ............................T GAGGTTCGGGGAGAGTCCTCTAGAGCAGCTAG 42378 29 96.6 32 ............................G GGAAAGCACATTGTTAGGCTCGTTCTCAGCTC 42439 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 42500 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 42561 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 42622 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 42683 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 42744 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 42805 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 42866 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 42927 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 42989 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 43050 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 43111 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 43172 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 43233 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 43294 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 43356 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 43417 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 43478 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 43539 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 43600 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 43662 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 43723 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 43784 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 43845 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 43906 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 43967 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 44029 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 44090 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 44152 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 44213 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 44274 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 44335 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 44396 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 44457 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 44518 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 44579 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 44640 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 44702 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 44763 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 44825 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 44887 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 44948 29 96.6 32 ............................G CTATCTGCTCACAATGGCAGACCAGCACGGCG 45009 29 96.6 32 ............................G TCCGCCGGGAGGCGCAGGCGGCTGGTAGCGAA 45070 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 45131 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 45192 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 45254 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 45315 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 45376 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 45437 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 45498 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 45559 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 45620 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 45681 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 45742 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 45803 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 45864 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 45925 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 45986 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 46048 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 46109 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 46170 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 46231 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 46292 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 46353 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 46414 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 46475 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 46536 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 46597 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 46658 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 46719 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 46780 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 46842 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 46904 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 46965 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 47027 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 47088 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 47149 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 47210 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 47271 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 47332 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 47393 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 47454 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 47515 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 47576 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 47637 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 47698 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 47759 29 96.6 32 ............................T ACAAAAGGAATACCCAAGCCTTCGATTCTTTA 47820 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 47881 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 47942 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 48003 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 48064 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 48125 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 48186 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 48247 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 48308 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 48370 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 48431 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 48492 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 48554 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 48615 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 48676 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 48737 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 48798 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 48860 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 48921 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 48983 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 49044 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 49106 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 49167 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 49228 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 49289 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 49350 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 49411 29 100.0 32 ............................. CCAATACTATTAATGCGCAATCCAAGAAAACG 49472 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 49533 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 49594 29 96.6 32 ............................G AAACCATCGACCTAATCCTAGAGGCAGGCGAG 49655 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 49716 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 49777 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 49839 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 49900 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 49961 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 50022 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 50083 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 50144 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= ================================= ================== 132 29 97.7 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : TCAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //