Array 1 304396-304747 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNB01000005.1 Listeria monocytogenes strain NRRL B-33190 PROKKA_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 304396 29 100.0 35 ............................. CCGCAAGTAGAGAAACGTCTTTCGCTTTTTAGCAT 304460 29 100.0 37 ............................. ATTAATGGGTTGTTCTTTTTTTGTAGGAGGGAAAATA 304526 29 100.0 37 ............................. ACCGCACAATATAGTTCTACATCAGTATTGTCTAAAA 304592 29 100.0 34 ............................. GCAATACTGAAAGCTTGGCACGGAAATCCTCCTG 304655 29 96.6 35 ..............T.............. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 304719 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 95.4 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAAGGATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGAGACCGACAGAAAGTTGTAAGTGGCTAGGGGAAGGGGGGGTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACCCCACCACCATCCATCAACCCAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTTAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCCCCTCGGAAATGAAATTATATGCTTCTACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATCGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCACCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 320352-321872 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKNB01000005.1 Listeria monocytogenes strain NRRL B-33190 PROKKA_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 320352 29 100.0 37 ............................. CTGTTAGAGTACGGGGGCTCTGAAATACTCTCCACTC 320418 29 100.0 36 ............................. ATTTAAAATGTTAATCTTTACAGCGGAGACTCCGCT 320483 29 100.0 35 ............................. ACGCTCTGGTTTACGAGTGAAATTAAGAGCACCAT 320547 29 100.0 35 ............................. ACGCTCTGGTTTACGAGTGAAATTAAGAGCACCAT 320611 29 100.0 35 ............................. ATAATTCGCGTTTCATTTGTTAACTTAGGAATCTC 320675 29 100.0 38 ............................. AAAAACATGTTAGAACCAATACCGCGCTGGGAGTTCGA 320742 29 100.0 34 ............................. AGATACATCCAGCGGTAATAATCGAGGTCATTCT 320805 29 100.0 36 ............................. GAGGGAAAAGGTACGAAAACACCAGCTGGTAGAAGA 320870 29 100.0 38 ............................. GATCCTTCCAGTTCACCAAACACAATAATTCCGTGCTG 320937 29 100.0 39 ............................. ATCTATAACACCAAAACAGGTAAAAACAGGAAAATCGTT 321005 29 100.0 34 ............................. ATACTTATTGTGCTCATAAACAAGTATTGCTGTC 321068 29 100.0 36 ............................. AAGTTTTTCCGGGACAAATTAAGCGCGCTCTGTGGT 321133 29 100.0 36 ............................. AAAGCTAAGGCAGTAGCCGCTAGTTTTAACACTAAC 321198 29 100.0 35 ............................. AAATCCATTTTTTATGCACCTCTTCATTTTATTTT 321262 29 100.0 37 ............................. TCTATTCCCCATGCGGTTTTAGGAGTGCCGGTTATCC 321328 29 100.0 36 ............................. TTTGATTTTACCTGAATTCAGTCGCGTGTTATCCCA 321393 29 100.0 36 ............................. TAAGCAGCTAAACCGATTGCCCCGATTGCCAGCACA 321458 29 100.0 35 ............................. TGCCCTGCTAGGCGTAAGCCCATTTCTGTAATTTC 321522 29 100.0 36 ............................. TAGGGAAAAGAGAAATATCTCTCAACGCGAATTGGC 321587 29 100.0 34 ............................. ACAGATGGTCGAGCTTATCAAGAACAGTTTCTTC 321650 29 100.0 35 ............................. ATGATTATCGATGCGGGTATTCAAATTCTAATGGC 321714 29 100.0 37 ............................. TCCTACTCGCCTCCTAAGACCATTTCGGTAAGTTCTA 321780 29 100.0 34 ............................. GGTGTTTGCCTTGTTAACTTGTCACGAGAGTTAG 321843 29 93.1 0 .......................A....C | C [321866] ========== ====== ====== ====== ============================= ======================================= ================== 24 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTAGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATTCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTCAAACCCAAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAACCCTTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCCCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTTGCAAACAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //