Array 1 76-6607 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRN01000015.1 Petrotoga mexicana DSM 14811 P.mexicana__contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================= ================== 76 30 100.0 36 .............................. TTTTTTTATCTCTTTCATTTTTTACCCCCTTTATGC 142 30 100.0 35 .............................. CAATACAAACGGCATTGTAAAAGAGATTGATACGT 207 30 100.0 36 .............................. CAGGATCAGGCTTGAGCAACTCTTCCAACTGCTTAA 273 30 100.0 39 .............................. TTAATAAAAATAAAACTATTATAAGCGGAATATATTCCA 342 30 100.0 36 .............................. CTATGATTCGAGGGTAAATACTTTTAGGGATACAAA 408 30 100.0 37 .............................. ATCTCCCTTTCGGTAACCTCTAAAAAAGGCACTTCTA 475 30 100.0 36 .............................. TTCAATTGGATACTTTCAAATATCTACGTGGAGGGG 541 30 100.0 35 .............................. ATAATTTCGTTCGTGTATCTTCTGCAACTTCTTCA 606 30 100.0 38 .............................. GAAACTCCGACGGCAATATTTGGAAGGCTTGACAATAA 674 30 100.0 37 .............................. AATAATACGATTGAACAGTTTCAAAATGAGAATTTAC 741 30 100.0 36 .............................. TTCCAAAATTTAGAGAAGGCATTAAAACTCGTATTC 807 30 100.0 38 .............................. TTCTATACGTAGTTGTACTTGTTTTTTGTTTATTTTCT 875 30 100.0 37 .............................. AATATGAAGAGAAAAAATCCGAGCAACTTATTACATT 942 30 100.0 36 .............................. CATTCAAGAAATGTTGAGACTGCAAACTCAAATAGA 1008 30 100.0 37 .............................. TTGTTTTGTTTAGCATTGTGTTCCAATCTTCTATATC 1075 30 100.0 37 .............................. TCGTTATTGTATATTATTCCTTCCAGTGCATCCAATA 1142 30 100.0 38 .............................. TTCAAAACAGCTAACAATCCTTCATCTTTTCTTTTCAA 1210 30 100.0 35 .............................. TTTGCTTCTTCTACTATTTCATCAAAATTTATTCC 1275 30 100.0 37 .............................. TCTGGATCAACGAATGGATCTGACAATTGCCCAGTAA 1342 30 100.0 37 .............................. CATGGCTCTTTATGACTTCGTGACAAGTTCCATTTCA 1409 30 100.0 37 .............................. TATGCTTTACTTCGGCTAAATCTTTCAATTCTTTTAA 1476 30 100.0 37 .............................. TAGTATCACTTGCGACTGATGGTTCTGGTGCACTCAT 1543 30 100.0 35 .............................. TATATTAGATGAGGTACATAAATATTCAGCCAAAT 1608 30 100.0 37 .............................. TATTTTTCGTGAATGTTTTGAATTGATTTTCAGCACT 1675 30 100.0 35 .............................. TTTATATCCATTGCTATCACTGAGTACGTCTAATG 1740 30 100.0 37 .............................. ACTATTTGGGATTTGCTTTATTCCCATCCATGAAACA 1807 30 100.0 40 .............................. TATACTCTCCACTACTTGCTTTTTGAAAATTTTCGTTCTC 1877 30 100.0 35 .............................. TCTTTTTCACCAATCATCAAGCCTTCACGGAAGAA 1942 30 100.0 36 .............................. CAACAGCATCAATCAGAACTTGATTTCCGGTGTCTA 2008 30 100.0 35 .............................. TTTTTCTACGATATGTTTATAGATCTCGTTGTTGA 2073 30 100.0 35 .............................. TTGCTACTTTGTGGTCGCAGAGTAAAATCTGCTTT 2138 30 100.0 38 .............................. AAGCTGAGTTTCCAAGTCTCAAGTTCAAAGCTATTTGC 2206 30 100.0 36 .............................. CTATCTTTATGCCGTTTTCTCCCTCCACTTCAATTG 2272 30 100.0 36 .............................. AAATTACGATTGTCAAGCAAAACTTTGAGAAATTGT 2338 30 100.0 37 .............................. TAAATAGTGTGTTTCAGCGTTTTCAAGCTATTTTTGG 2405 30 100.0 39 .............................. AAATTTTCTAAAAATGATACTGGATGATTATCAAAAAAT 2474 30 100.0 37 .............................. TCTATTTGTAAACTCCCTTCAACTAACACTAAATAAC 2541 30 100.0 36 .............................. AGATTTATCTTTTCTGTTGGAGTTATTTTAGCGTCA 2607 30 100.0 36 .............................. TTAACAAAGTCATAATTGACAGGTCTCAGTTCATTG 2673 30 100.0 36 .............................. AATATTTTGAATAGTAAACTAAAGAACAAAGAGCAA 2739 30 100.0 37 .............................. GCTAATAATGGAGTTATATAAGTATTCAAAGCGTCAT 2806 30 100.0 38 .............................. CACGATTGCTTTCTGTTTCTATTATAGCATAGATTAAA 2874 30 100.0 37 .............................. AAAGCAAGCTAAACGAGCTAACTTCTTTAATAAAAAA 2941 30 100.0 37 .............................. AAAGCAAGCTAAATGAATTAACTTCTTTAATAAAAAA 3008 30 100.0 38 .............................. ACTGTTTTTCTAATTGTTCTAATTTTCCCTGCTTTCGT 3076 30 100.0 38 .............................. TCGGATATATTCACACAACGGGGGCAAATTTGATTTAA 3144 30 100.0 37 .............................. ACAATCAATAAATCATGAGCATTTTGAAATTCAAATC 3211 30 100.0 35 .............................. TTAAGTACGCTTTTCTGTACGTCTTGAGGTCGTTG 3276 30 100.0 38 .............................. AATTTTCTTTTGTTCTTATAATATTTGAAAGGTAGTTC 3344 30 100.0 39 .............................. TTCAAAAAGTTGGTATTCCATATTCTTTGAGCTGTACTT 3413 30 100.0 38 .............................. TTTCATTTTTGATTAAAACGGGTTTCTTATCTGGCATA 3481 30 100.0 36 .............................. ATAAAAAAGAAATGGCAGAATTCTTATTGACAGATA 3547 30 100.0 35 .............................. AACAAAGAAATAAGAGAAATACTCCAAACTCCTGA 3612 30 100.0 37 .............................. ATATAAATGTTGTAATCATTGAATTCGTGTTCAGCTC 3679 30 100.0 36 .............................. CCCTGAATAAGTAATCAATAGTCCAGACGGTTTTAG 3745 30 100.0 35 .............................. ATAGCTTGTTTCAACTGTGCTTCTGTAAACTGCTC 3810 30 100.0 36 .............................. TTAACACAGTAAAAAGGGCATATAGGCGTGATGTGT 3876 30 100.0 37 .............................. TTAAAGAACTTGAAGAAGTTAAAAAGCTTGCTGGTAA 3943 30 100.0 39 .............................. TCTGTTCTAACATCTGAATAATCACGCTTTTTTAATTCT 4012 30 100.0 37 .............................. TTGCTAAGTGAAATAAAAAGTGGTTCATTGCTTTTCG 4079 30 100.0 35 .............................. ATATATATGCCATCTTTATACATGTAAATTTCTTC 4144 30 100.0 37 .............................. GAAGAATAAATTTCTATACCTTTGTCAAGGTTTTTCA 4211 30 100.0 36 .............................. TCAGGAGAGTACGACAACGCAGTACGTTTTGAAATG 4277 30 100.0 37 .............................. TCTTTGAAACTTTTATTTTTTGCTTCCTTAAGTATTT 4344 30 100.0 37 .............................. TTAGAAATGATAGAAGCTTTTAAATCATCTATTAAAA 4411 30 100.0 37 .............................. ATTTGAGATTAACAATAGCAAGTACAGCACAGCGTAT 4478 30 100.0 36 .............................. AAAAAAGAATTATATTATTATAGCTTTCACTTTGTA 4544 30 100.0 37 .............................. CACCTTCTTTATAAAAGACTTATAAAGCTTGAAATAA 4611 30 100.0 41 .............................. TCCATTTTTTATTCCTCCTTTTTCTTTTTCTTACAATTCCA 4682 30 100.0 35 .............................. TTTTATAATAGACTGGTTCCATAGGTTTGCCTTGA 4747 30 100.0 37 .............................. TATTGATTTCCTTTTGTATCAGTAAGTAAATAACTTC 4814 30 100.0 38 .............................. TACTTATGTACAATTTGCGATGGTAAATGAATATATAG 4882 30 100.0 38 .............................. ATCAATTTCATATCAATTTAAGAATGACGATAGCAAGC 4950 30 100.0 37 .............................. TTTTGAAAAAAGGGCTCACAGAAGAACAGGCAGAAAA 5017 30 100.0 38 .............................. TCTTTCTCAACTTCTGAAATCCGCATTTAATGAGACTT 5085 30 100.0 38 .............................. ATTTTAGAAGAGCTTGAAAAAATAGAAAGTCAATTTAA 5153 30 100.0 38 .............................. AAGTTTCTATTCACAGCTATTGTAAAGTTTGCAAATGT 5221 30 100.0 38 .............................. AATCAAGAACTTGATTATATTAACAAAAAAATTTTTCC 5289 30 100.0 36 .............................. TCCATTCAGGTTTCAAAATTTGAATTAATATCGTAA 5355 30 100.0 35 .............................. ATGTATTTTTAGAAAAAATAGAAAAAGAAGATTTA 5420 30 100.0 36 .............................. ATAAGTGGAGGATTTAGCAAAGAGGAAGTTATACAA 5486 30 100.0 37 .............................. ATCAAACTATTAAAATATTCTTCTGCCATTTTTTCAT 5553 30 100.0 36 .............................. GCGTCAAATCTTCTAATTGGCAAAGCTTCGCCTTTC 5619 30 100.0 36 .............................. AACTTTCCATCGCTAAAAACTTCTACAGCGTTTCTA 5685 30 100.0 38 .............................. AATCAAGAACTTGATTATATTAACAAAAAAATTTTTCC 5753 30 100.0 39 .............................. GAGGATCGTATTGAAGAACTTTCTAATACAGAATTACAA 5822 30 100.0 39 .............................. CTAATATTTTTTCACCTATGTTCAAATTTAGACCACTGC 5891 30 100.0 35 .............................. CTGAATACTTTCAAAAAATACGGGTTTCTTGGAAT 5956 30 96.7 36 ........................C..... ACTTTTAGTTCTTTGTGGTCGGCAACAGAAGATTAT 6022 30 100.0 36 .............................. TTGCTAAATTGCTCAAAGTTTGATTTGTTATTCCAG 6088 30 100.0 38 .............................. TGAATTTACTGGAAAAATTAAAAGAGGAGATAGAATGG 6156 30 100.0 36 .............................. ATATTTGAAGAACCTAAAAAACGGAAGCGAGGTCAA 6222 30 100.0 36 .............................. ACAGCAAGGACTTTGCAACTCAGACCACTTTGTCAG 6288 30 100.0 38 .............................. TAGAGTAACTTTTTATAGACCTATTCATTTCGATCCTC 6356 30 100.0 39 .............................. CTAATATTTTTTCACCTATGTTCAAATTTAGACCACTGC 6425 30 93.3 57 ............................GG TAGGAGCGAGGAATGGAAACATTTCATCTTCATTTATACCTTCTAACATTCTATCCT 6512 30 90.0 37 ...............G.A.T.......... CTCTGAGGAATTAAATTAATCGGTATCGGATAATAAT 6579 29 86.7 0 ........T..........A...-.....G | ========== ====== ====== ====== ============================== ========================================================= ================== 98 30 99.7 37 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : CCATATTTGACAAGGAGCCAGTTTTGCTTGACAATCGTAATTTTTTATGATATAGTATTTATGTTTATCTTATGCC # Right flank : GGGTTGGAGAGGAATGGAGGGTGAGGGAAAAAATGGAAACAGTACAATCTTCATCTTCCGGCAATTTCAAGTAATGTTCTTCCACCTTTTAAGCAAGCTTTGATAAATTGAAGGAAGGGAAGCAAAGTTAGCGAACGTAAGCACTTTTTTCTACGTCTTTTTGATTTGAAGAATAGAAGATAGCCTAAGAGTTTAGACCTCGTTGTAGATTATTCTTAAGCTTCTACGAAGTATCCCCTAAATTTTTAATCACACTTTAATTAATGGAAAATACGAATGAAGCGGGTATTGATGTCTCCCCTTTTGCTCTAAATAATGTAAAATGTAGATAAAGCAGAAACTACATTATACTAACTTGCTGAGGTTCTATACTGTACAGTCCAGCCTTTTAGACAAGCTTTTATAAAGGGAAAGTAGGAAAGAAAATAATGCCTGCAAACATGAGGCATTTTTCTCTTTTCTTTACTTTGAAAAAGATTACAAATAGAGGGGAATAAGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //