Array 1 606353-607174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHKO010000001.1 Escherichia coli strain 6207 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 606353 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 606414 29 96.6 32 .............T............... CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 606475 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 606536 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 606597 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 606658 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 606719 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 606780 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 606841 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 606902 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 606963 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 607024 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 607085 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 607146 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 632875-634246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHKO010000001.1 Escherichia coli strain 6207 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 632875 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 632936 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 632997 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 633058 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 633119 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 633180 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 633241 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 633302 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 633363 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 633424 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 633485 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 633546 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 633607 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 633669 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 633730 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 633791 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 633852 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 633913 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 633974 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 634035 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 634096 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 634157 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 634218 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //