Array 1 81884-82094 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYWA01000007.1 Aerococcus urinae strain UMB2126 NODE_7_length_99038_cov_28.145636, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 81884 28 100.0 33 ............................ TGTGTTGGAAGGTATATTTAGACAACTAATAAA 81945 28 100.0 33 ............................ CGACCGCGTTATACGTGCTGCTGCCTTCTGATT 82006 28 100.0 33 ............................ TGTGATAAGCACAAACCCATTACAAGATTCATT 82067 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 CTTTTTCCCGCAGACGCGGGGGTGATCC # Left flank : GCAAATTGCTATGTGCTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGAAATCTGATCAAATTACAAATTCACCGGATTATTGAGTCAGAGTATGATTTTGGCCGGCGTGACAATGCCTTATTATGTCCGCACTGTCAGGAACAGCTGGGCTCTTTGAGTGAACATAAGGGCCGGCCTTGTTATTTCTTGCACCGAGGACGAGTACAGACCAAACGCTTGCAGCATTATAAAAGCTAGCCAAGGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGGAATTGGGTAGGTTAGGAATGACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : CTCAGCAAGGCGAATTAGCTTTTAACGAAAAAGGCTTTTTCCCGCATTTATTTGGAAATTAATAATATTTGATTTAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGCTTTGATCAATATTTCTTTTGAAATCATCAGCTCGATTTATCCAAGCCTTGGGGTGGACATGCTATAATATAAAAGTAAAATAACTTTATCATCCTTTCCTGTGATAGGAGGATTTAAAGCAAGTAGGTATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTACTCGGAGTGTTTTCATATCTGGGTCGAGAACGCAAAACCAATTATCCCAAGAAGTACTAGATTCCATTGACGCAATTATTGACCAAGGCATAAAGATTAACCTAGGGGATTCCAACAAGGGGGTCGATAAGGAAGTGGCTGACTTGCTTCGACTTGAAAATTATCAGGCGGTTGAAATCTTCACCATTAATCAAAAGCCACGGATTGCCATTGAAAAGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCAGACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10050-10948 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYWA01000026.1 Aerococcus urinae strain UMB2126 NODE_26_length_16357_cov_17.306038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 10050 32 96.9 34 ..........T..................... CTTTTGGTACCTCTGCGATCGCCTCATCATGGAC 10116 32 96.9 34 ..........T..................... AACGCTGATCCGTAGGTTAACCCCTCGTCTCTAC 10182 32 96.9 34 ..........T..................... AATAACAACTGGTTTCTTTCTGTATTTCATTAAC 10248 32 96.9 38 ..........T..................... ATAATATGGGCTTAGATTTTAAAGAAGGTAGTGTGAGT 10318 32 96.9 35 ..........T..................... CATTTTTCTGATCATGTCGTAGATCTCTTGTTTGC 10385 32 96.9 34 ..........T..................... CGCAATATGCGAATGGTATTGGGTTTTCTACCGG 10451 32 100.0 34 ................................ AAGTGGACTAACCGCCATCTTTCTTTAGGGCCGT 10517 32 100.0 36 ................................ TTGTAATCTACCCAGTAGGGATAATCCACATAAACG 10585 32 100.0 34 ................................ TATAAACTTATTTGCTCCGTCAACGCTCATGTTC 10651 32 100.0 35 ................................ CCTCATAATAGTAGGGCTCTAATTCTTCGCGTCCT 10718 32 100.0 34 ................................ CTTATGGCTAATAACGAGACCCTGTCTAAGTTGC 10784 32 100.0 35 ................................ ATTGCATTATGGATCAACAAAACGAGCCCATCATG 10851 32 100.0 34 ................................ TAAGAATTGTTGAAACCATGAGTGAAATTCGCTT 10917 32 81.2 0 .......A..T.A...A...AC.......... | ========== ====== ====== ====== ================================ ====================================== ================== 14 32 97.3 35 GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT # Left flank : AGCTATTGGCAAGGTATATCCGTGGAGACATTGACTACTATCCGGCATTTATTAGTTAAAGGTGATTTAAGATGATGGTGTTAATTACTTATGATGTGAATACCGAAAGTAAGGCTGGCCAGAAACGCTTACGTAAGGTGGCTAAGGTCTGTGTTGATTATGGTCAACGCGTTCAAAATTCCGTTTTTGAATGTAGCTTAGATCCTGGGCAATTGGCACTCGTTAAATCGAAATTAGATGGTATCATAGATAGTGAAGTCGACTCGATTCGTTTCTATAATCTGGGTAAGAATTGGGATCATCGAGTACAAACCTTAGGACGGGACGATACCTATCACCCTGAAAAGGATGTCTTACTCTTATAACGAACCCCAAGCACACAGAATTGTATCGGTAGCTTCGTTTGTATTTTGGACTCAAAAATACAATATAAGTGATTATTTTGCTCTTTTTATAACACTTATATTATGAAAATATAGTGAAAACTTGTAAAAAGAGCT # Right flank : TTGTAATTGCTGATAGTATCAACATTAGTAACGAGGGTTCAGACTTTTTGTCTGTATGGATTGAATTATCAGTTAACGAAAAAGCGATACGTTTTTCTTGTCGCAATTTATACACTTATGTAGGTAGAAATTAATATGCGGCTAAGTATTACAAATATGGTCCAAAGTTGTAGGCTTTCTTTCAGCAAAGATTGACTATTTATACCAAGCAATCAGCCCTTGCCAGCTCCTCCATCAGCGAGCTCAACAAGGGCTTTTTCTATTACATCGACTCATAAAAGCACTAAAAAAATTAACCCAATCCCAAAAATAAATCACAGCCCCACTAAAACCGATCATTCTTGATCCTTTTTCCTAAGTTGACAGTAGTCCTTGGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTT # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT # Alternate repeat : GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAAGCTACACGCTTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //