Array 1 1079-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXE01000002.1 Pseudomonas stutzeri TS44 Contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1078 29 100.0 32 ............................. TGATGTCGCGTTGCAGCGCCGACCACTTAATG 1017 29 100.0 32 ............................. TGTTCGACGGTACCGGCGAGCGCGTGTGGACC 956 29 100.0 32 ............................. TTCTCTTGCTCGCCATCGGTCTGCAGGAAAGC 895 29 100.0 32 ............................. TGCTGCCCAACCGACGAAGTGACCCAACCGGA 834 29 100.0 32 ............................. TCGAAGATACGGATCAGCGCATCGGCTAGTTC 773 29 100.0 34 ............................. CCTGGCAGATGACCGTTACCAGTATCGTTCAGGC 710 29 100.0 32 ............................. ACCCAAACGCTTGCGGCACTCCAATATGATGC 649 29 100.0 33 ............................. GGGATTAGCCGGTTAGTGCCCTACCATGAAAAA 587 29 100.0 32 ............................. TCGCTGTCCACCGGTAAGGTGGCGGCCGACCA 526 29 100.0 32 ............................. TCACTGTTCAGCCGCTAAGCCTAGGCGCATCT 465 29 100.0 32 ............................. GTTCCGGCAGCCATAGAGGATTTATCCGTCCG 404 29 96.6 32 ............................A GCTGCGCACATGGCAGCAGTGGGAGGCAGGGG 343 29 100.0 33 ............................. CATTGGCGCTATCACCATTACCAATGGCGGTAC 281 29 100.0 32 ............................. ACCAGTGCGGTGTATGACTCGGCCCCATAATC 220 29 100.0 32 ............................. ATGGCATTGATGTCTCGATGTCTACCGAAGCG 159 29 100.0 32 ............................. TTACCCGCCGGCGCAGAACGTGCTAGTTACGG 98 29 100.0 32 ............................. CCTGCAATCGGTGACCGAGCAGGTAAAGCGCG 37 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 18 29 99.8 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GGCCGCATCATCCCGTTGATCGAGGAGGTGCTGTCGGCGGGTGGTATCAGTCCGCCAGAAGCGCCGCCGGAGTCCGTGCCGCCCGCCATCCCCAACCCTGAAAGCCACGGCGATGCCGGCCACAGGAGCAAGTGAGTGAGCTTTCTGGTTGTGGTCACCGAAAACGTCCCGCCGCGCCTGCGTGGACGGTTGGCGATCTGGCTGCTGGAAGTGCGCGCGGGCGTCTATATCGGCGATGTTTCCCGCCGCACCCGGGAAATGATCTGGCAACAACTCGAGGCGGGCTACGAGGACGGCAACGTGGTGATGGCCTGGGCCAGCTCGAGCGAGTCTGGCTATGACTTCCAGACCCTCGGCGCCAACCGCCGCGAGCCCATCGATTACGACGGCCTGCGGCTGGTCGCCTTCAAACCCCAGGAAACCCCCGATCTTTAACAAGAAAAATCGGTAGATTTTTCGTGACCGATTTTCTCTTTTGAGAACAATCGGTTACGTTTAGT # Right flank : GACAGGTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 64835-64013 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJXE01000023.1 Pseudomonas stutzeri TS44 Contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64834 29 100.0 32 ............................. GTCTTCCCAGCGTTGGGGGGTCGCAAACGTCT 64773 29 100.0 32 ............................. CGCTACACCATCGAGGAACTGAAGGCGCTCAA 64712 29 100.0 32 ............................. GGGGGTGATGCATGGCGCGTAAACAGCCCACC 64651 29 100.0 32 ............................. GCCTACGACTGGGACGAGCTCAAACCGCTGTT 64590 29 100.0 32 ............................. GCCGTAACCAAGGCCACCGGCTCCCCGGCCAC 64529 29 100.0 32 ............................. CCCCGACCACCGCCGACCTATTCGAGCCGCGA 64468 29 100.0 32 ............................. CAGGTAGAGGGGGCGCGAGACGAAAGCGGCCA 64407 29 100.0 32 ............................. AGAAAATGAGACTCAAAAAGGTTGGTGTGGAA 64346 29 100.0 32 ............................. GATTTCGATCGCATCGTCGCCACCCACGGCTG 64285 29 100.0 32 ............................. GACCTGGCCTCCGCCGAGAAGAAGGCCAACAG 64224 29 100.0 32 ............................. TGGTGACCACCCTGGGAGCTGGTGTAAACGCC 64163 29 96.6 32 ..............T.............. CACACCACGCCCCACTCACGCATCTGGTCACG 64102 29 86.2 32 ...C.......C....TA........... GTTTCTAAACGTCAGCTCGATTCCGGCATTGA 64041 29 79.3 0 .........ATC......AA........A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.3 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CCCGCGGGGATGAACCGGCCAACAACCTGACGCTGTACCCGCACAAGG # Right flank : CCGGGCGCTGCGAGCATCAGCACGCGCAACTTGCGCCCCCGCTCCCGCAGCAACGACCGGTACTGAGCAGAAACGCGCTAGAGCTGCCGTGCGGCGTTTGCAGACCGACGCGTTCTGTTTAAGCTGCAGGCCCCTGCGGCCGCCGAATATCCGACTTGAAGAGTCGACCTTGGTATAGCTGCCAAAAAAGCAGAGGAGCCTAGAATAGGAGCGTTAAAGTGCGGCATTAGGCCGCGACAGGGCTTCCTTGGGGCTTCTGCGCGGGGATGGCCGGACTGGTCGTCCTTCCGGGCGAAGCTGCTACACCAAGCCTGGCCCGTTGGATGTTGTGCGAGTAGTTTGCAGAACCATCACGGACGAGCATTAGACAATTCAGAGGTGATTTTTCATGGCAACGGATTTGAACAAGTACATTCGCAATGCGGCTTTTCTGGATAAGGTCGTTTCCGCAGAAGAAGCCGCGTCGTGGATCGAAGACGGCATGACGCTGGGTATGAGCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //