Array 1 345440-346003 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FNYU01000001.1 Streptococcus equinus strain Ye01, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    345440	    36	 100.0	    30	....................................	AAGATTAATAACCCACTATGGTATCTAGCA	
    345506	    36	 100.0	    30	....................................	ATCAAACGTGCTTGTCGCTTGCTCAAGATA	
    345572	    36	 100.0	    30	....................................	TGTAATCAACATGTATTTAACCGATTACCG	
    345638	    36	 100.0	    30	....................................	GGGAGTTTTCTCATTGATTGCGAGTTTAGT	
    345704	    36	 100.0	    30	....................................	CAAAATGTTTAAAGATTTCCTTGAAATGAA	
    345770	    36	 100.0	    30	....................................	TTCTCGTTGGGAAAATGAATTGTCTGTTCC	
    345836	    36	 100.0	    30	....................................	TTCAGCATATTCAAAGTATTTGTCCCAAGC	
    345902	    36	  97.2	    30	.........................A..........	AATAAACAACACCCTAGTCAGTTCCCCAAC	
    345968	    36	  80.6	     0	A.......................AAA...TCT...	|                             	
==========	======	======	======	====================================	==============================	==================
         9	    36	  97.5	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   TTTTCACAAAGAAGAAGGCGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGGAACTGAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATCTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCATATTTAAAGAAGACAAAAGCTATTCGTAAAAATGTTACGGTACCAGAATGGTTGGTCAGATTAGCTGACCGTGAGCAGGTAAATTATTCTGAGGTTTTAACAAAAGCTTTGGAGAAAAAGTTGCAACTATAAGTTTTGAGATTGTTTAGGAACGTTGAAAAATCAAGGCTTTTAAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATTGGTCCACGAG
# Right flank :  CTAAAACTTTAGTGAAAATCACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGCGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCTACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCCGTAGAACGCGAAATCGC

# Questionable array : NO	 Score: 6.14
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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