Array 1 20468-24582 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNKP01000044.1 Vulcaniibacterium tengchongense strain YIM 77520 Scaffold44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20468 28 100.0 32 ............................ GGCCGGCGTTGCGATGTCGTTGACCAGCAGAT 20528 28 100.0 32 ............................ GATCTATCCGCTACCGGATACACCGAGGGAGA 20588 28 100.0 32 ............................ ACGCCGCAGTTCTGGCTGAACCTGCAGCACAA 20648 28 100.0 32 ............................ AGTCCGGCCAGTCGAAGTTGGGCTGCCCGCGT 20708 28 100.0 32 ............................ GGCCGATGCGCATCGCCGTCCGCGAGGTAATA 20768 28 100.0 32 ............................ ATTGCCGCGCATGTGATCCATGAAGCTCTCCT 20828 28 100.0 32 ............................ GACGAAGCACACGCGCCACTGGTCGTTGATGC 20888 28 100.0 32 ............................ TTGTCCCAGCGCAGGTTCTCCCACTTCAGCAC 20948 28 100.0 32 ............................ TTATCCCTCCAACAGCCGCGCGAGGGGCCGCG 21008 28 100.0 32 ............................ ATTGACCGGAGGCCCCCATGAAGAAGCTGCCC 21068 28 100.0 33 ............................ TTCCAGCGAAATCAATCAATTCCGCCGGCACGC 21129 28 100.0 32 ............................ TCTTCCGGATTGTCCGGATCAACCCCCAGGGC 21189 28 100.0 32 ............................ ACGCCCCGGCTTCGGCCGGGGCATCACCCGAC 21249 28 100.0 32 ............................ GCGCTGAGCAACCCGACGCAGATCAACGGCAA 21309 28 100.0 33 ............................ TCAAGGCGCGCCGCTCGCATAGGGCGCGCAATT 21370 28 100.0 32 ............................ TTTCGCAGGGCGCGGGCCTCTCCACGACAGGA 21430 28 100.0 33 ............................ AGTTGGCAGACCCGCCTGGGAGCGCTGTCGTCC 21491 28 100.0 32 ............................ AGCGGATCGCGTTCCCGGTGCCGTGGTTCACC 21551 28 100.0 32 ............................ AACTCGCCGCCGCGCTGCGCGAACTGCATAGC 21611 28 100.0 32 ............................ TTTCGGGGCGCTTCGACAACCGTCGAGGAGGC 21671 28 100.0 32 ............................ GCCCATCTCGGTTGTGCCACCAGGCTCGCAAG 21731 28 100.0 32 ............................ TCAGCGTGGGAACGGATCGCCGCGAGAACGTC 21791 28 100.0 32 ............................ TGATCGGCCAGGACGTGGACGAGGTCGCCGAG 21851 28 100.0 32 ............................ AGTTCCACGATCTGATCGTCGCTGAGCTCGCT 21911 28 100.0 32 ............................ TTCCCGCGCGGCGATCTCGACAGCGATTGCTT 21971 28 96.4 32 ............C............... ATAGGGCAGAGGGTTGTTCTCGCCGAAACGAA 22031 28 100.0 32 ............................ TTGACCCGGACTTTGCCCACTGCGGCGACATC 22091 28 100.0 33 ............................ AAGGGAGACCGCAATGAGCAATGCAGTAGTCGC 22152 28 100.0 32 ............................ GTCTTGGCCCAGGCGCGCCGCTTAAGAGATAT 22212 28 100.0 32 ............................ ACGCAACGCGGCCGAATGCCCTTGCCTTGACG 22272 28 100.0 32 ............................ GCCATGAGGGCAAAGAAATGAAGCTCAACGAA 22332 28 100.0 32 ............................ ACGCGCCGCGCTCACTGCTTCGCGCAGCACGT 22392 28 100.0 32 ............................ ATAGCGCGCCCTCATCTCCCGGTGACGGACGA 22452 28 100.0 32 ............................ ATCTCCGATGTGGCGAGACATGTGCTCTTGGC 22512 28 100.0 32 ............................ AGCCTCGACCAAACGCGGAGAAGGTGGTCAGG 22572 28 100.0 33 ............................ TCAATGGGATGGACGGGTGCAGCACGATGTCCA 22633 28 100.0 32 ............................ TCAGGCCCTCTTCTGGATTGTCCGGATCAACC 22693 28 100.0 32 ............................ TTTCCGAGCTGGCCGAGATCGATCTCCATCTC 22753 28 100.0 32 ............................ TTTCCGAGCTGGCCGAGATCGATCTCCATCTC 22813 28 100.0 32 ............................ TTTCCGAGCTGGCCGAGATCGATCTCCATCTC 22873 28 100.0 32 ............................ ACCAGGGGGCCGTATCGCTCATCCCTGCACCG 22933 28 100.0 32 ............................ TGTCTCCTTGTCACCTGTCGATCCCGCGGTCC 22993 28 100.0 32 ............................ AGCGGAAAGTGCATCGCGCCCGCCGGGCCCTC 23053 28 100.0 32 ............................ ATGACCGCGTAGCGCTGTCAAGACCCGGGGCG 23113 28 100.0 32 ............................ TTCGTCGCCTTGCCACCGTTGCTGGCAAAGGT 23173 28 100.0 32 ............................ GGCAGGGGAGGGGACGCCCTCGGCGGAGGCCT 23233 28 100.0 32 ............................ TTCAAGCGCAACATGCTCGCGCGCACCTTCCG 23293 28 100.0 32 ............................ ACCACCCCGGAGGAGGAAGCCGCATGATCCGC 23353 28 100.0 32 ............................ GAGCCGCGCACGCGCTCGACGGTGATGCCCTC 23413 28 100.0 32 ............................ AGCCGCGTGACGACTGCGAGGACTGCGGCGAG 23473 28 100.0 32 ............................ TCGTAGGCCATCGCACGCAGCGCGGTGTACGT 23533 28 100.0 32 ............................ CGCAGGCTGAGACGCATCAGGCGCATCAGAGG 23593 28 100.0 32 ............................ ACATAGCTCAGGCCCTCCCCGCTTCCGAAACT 23653 28 100.0 32 ............................ GTCGGCGGAACGCAAGCGCGACCTGCGCTGGC 23713 28 100.0 33 ............................ CTGATGCACGCTCTAACGGATGGTGCATACGCT 23774 28 100.0 32 ............................ AGCCGTCCCGGCGAGGCGAAACAGGGAGACAA 23834 28 100.0 32 ............................ TACGAGTACTCCAAGGACGGGAAAACGATGCG 23894 28 100.0 33 ............................ ACCAAGCACGCTTTACGCCATTCATGTTCATGA 23955 28 100.0 32 ............................ TCGGGCCGCCACGTCTGGAATTTCCAAGCTTG 24015 28 100.0 32 ............................ GCTGTTCCCGTGCACGCGCATGCAGTAATCAT 24075 27 96.4 32 ........-................... AGCGCGCGACGCTGGAAACGCCGCGAACGCAT 24134 28 100.0 32 ............................ AATCCGGCGGGTTGGTGATCGGCATGGTGACG 24194 28 100.0 32 ............................ AGGAAGCGCTGCAGAAGCTGCTGGGCATCGTG 24254 28 100.0 32 ............................ GCGGGCGGCATTCGCAAGCGGGGCCGGAAAGC 24314 28 96.4 32 .......................G.... AAAGTCGCCGCACCAGTCCGCAAAGTCGGAAT 24374 28 100.0 32 ............................ GCCCCGCTGCGTTTCGCGGACGGCCGAAGCCT 24434 28 100.0 32 ............................ TCGACGCCTATGCCGAGTGCGCGCGGCTCGGC 24494 28 100.0 33 ............................ CTGGAGCGGGTCAAGTCACTGCCGTGCTCGGTC 24555 28 92.9 0 .......A...................A | ========== ====== ====== ====== ============================ ================================= ================== 69 28 99.7 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAG # Left flank : CACGCTGGCGGGACTGATGGCGGAGGACTGGCTCAAAGGCGTGCGCGACCACGTTCGTGCGACTGGCGTGCTGCCTGTGCCGGAAGGGTCGCCACACCGGACCGTGCAGCGTCGCCAGTTCAAGACCAGCGTCGAGCGGCTGCGCCGTCGACGCATGCAGCGCAAGGGCGAAACCGCGGAGCAGGCCGCGGAGGCCATCCCGGCCACGGCCGAAGACCGGCCCGACCTGCCGTACGTGCACCTGCGCAGCCGCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGCTCTCGGCCCGCTGCGGAAGGAGGCCGCGCCCGGCACGTTCAATAGCTACGGCCTGAGCGGCACCGCCACGGTCCCTTGGTTCTGACCCTTTTCTGCGGCACTCCGACAGGCTCTTTGACAATCAACGGCTTGCGCATGCCCTCCGCCGAAAGGGGGGCAGGCCCCACGTCGTAGGAAGCGGCACGCTTTCAACGACTTGGCGGAATATTCGTCTA # Right flank : ATAGGCCGCAGTCCCTGCCGGCGCCGGGGCGCTGTTTGCGGCGCTGCGCCGGTAAGGATGGAGCGTCACAAATGCTTGAGCGTCTCCTTCACGGCCGCCGCGCAGCGGCGGCTGACTTCGAGCGGTTGCTTGCCGTGGCGCAGCACGGCCTGGACGTGGCCTTCGGGGCTGCGGCGCAGTTCGACGATCTCGTGGCGGGCGACCAGGCAGTTGCGGTGGATGCGCACGAAGCGTTCGCCGAACTCGTCCTCCAGCGACTTCAGCGATTCCTCGATCAGGTCCTCGCCGCGGGCGTGGTGGACGACGACGTATTTCTCCTCGGCGTGCAGGTAGTGCACGTCCTCGATCGGGATCAGGCGCAGGCTGCCGCGCAGGCGCGCGCACAGGTGGCTGCGGCGGCGCGCGTTGCCGGATTCGGCGGCGCGCTCGCGGCCGGCGGCGAAGGTGCGCACGCGCTCCAGCGCCGCGGCCAGGCGTTCCGGGCGCACCGGCTTGACCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //