Array 1 209846-206157 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJG01000002.1 Parasaccharibacter apium strain AS1 Contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209845 29 100.0 32 ............................. TCAATATCCGATTTCAGTAGAAACAGATAAAA 209784 29 100.0 32 ............................. AAATCTTTGGGCTTCTTTTAAATCGTATCGCG 209723 29 100.0 32 ............................. CCGTAAATTATAGTGTAGCAGGCGCATCTAGC 209662 29 100.0 32 ............................. CTCAACGAAACCCCAAACTTTTCTTCCACATC 209601 29 100.0 32 ............................. CTCTTTCAGACTTGAAACAAACATTTCAGAAA 209540 29 96.6 32 ............................T CTGCGTGGCCTCGCTGGGGCGTTTCGTCCACC 209479 29 100.0 32 ............................. AGATTGATGCGGTTGCTCGTTTTATTGAGAAC 209418 29 100.0 32 ............................. CGATTTTTCCTCATTGTCGCCGTAATTGGCCT 209357 29 100.0 32 ............................. GCCTCACCTCGAAATAATTCTTGACAACGCGT 209296 29 100.0 32 ............................. TGAGGATATTTATGCTGCTGATTTTGAATGTG 209235 29 100.0 32 ............................. GCTTTCATCTGTCAAGTCGGGGATGGGGATAA 209174 29 100.0 32 ............................. GATTGAAAAAATGGGTTTTCAAACAACTGTTA 209113 29 100.0 32 ............................. AACGGACTTCCCAGACCCCGGCTCACCAAAAA 209052 29 100.0 32 ............................. GAATTTGAGAATAGCTAAAAAGCATTTCTCTT 208991 29 100.0 32 ............................. TTACGCTAATCTGCTTGCGGGTGAATGACAGG 208930 29 96.6 32 ...........................T. TACGGACCGTTCGTCCAACAGCTCCCCACCGT 208869 29 100.0 32 ............................. TGGGCCGCTATCTTCGCAGATCAGGCAGATGC 208808 29 100.0 32 ............................. CGGAACCTATTTTTCATAATTCGCCTCATAAT 208747 29 100.0 32 ............................. CCTATAAGACCCCGCCTCTATTAAAAAAATAC 208686 29 100.0 32 ............................. GTGCCGAGGACGTGACCATCGTTCCTCTTAGT 208625 29 100.0 32 ............................. AAGAACCATATTGATAAAAAGAAGCACGTAAT 208564 29 100.0 32 ............................. AATACAATAATTCTAACAATCCTGAGGTGAGG 208503 29 100.0 32 ............................. TGCGCTCTTTTGAAACGTTTGGTGAGGCTACT 208442 29 100.0 32 ............................. AATCGTCAACAGCATGAAAATGGGCGCCGCAT 208381 29 100.0 32 ............................. CCCTTAGACACAGGACACCAAGTGGTGAAGGA 208320 29 100.0 32 ............................. ATATGGGAGTTCCCTTACTCATGTGAGCATCC 208259 29 100.0 32 ............................. TAGCCGGTGGTCATCAGCCTCCCGCACCTATT 208198 29 100.0 32 ............................. AATAGCTGCACTAACCCCTGGCCTGATTGGAG 208137 29 100.0 32 ............................. AGCCTCATCATAACGTCTTTCATGTTCTATTA 208076 29 100.0 32 ............................. GGACACCACCCCAACCTTTCTGAAACCCTATA 208015 29 100.0 32 ............................. ATAACGGCCATGCCCTGCCTTGATGCTGCCCC 207954 29 100.0 32 ............................. GCCTAAAACTGTGCTCATTGTTGATGCTACAG 207893 29 100.0 32 ............................. GCGCAAAGAGCGTCAACCGCGTTCAAAATGTT 207832 29 100.0 32 ............................. AATATCCCGGCGCATCCTTAAACAAACCGGGT 207771 29 100.0 32 ............................. TTTCAGCGCATGACCTTTACAGCCGCCTCAAT 207710 29 100.0 32 ............................. AAATGGCGGTCATTTCACGGCGTGTCTGGCGT 207649 29 100.0 32 ............................. GCCGATACTCCACGTTGCGCTACCGCCGTTTG 207588 29 100.0 32 ............................. CTTTTGAGCATCCCCTTTTTTCTTATGCAATA 207527 29 100.0 32 ............................. TGCCCTCGCCATGACGTTCCATCAACGGGCGC 207466 29 100.0 32 ............................. ATATTGCTCGCCTTGGGGGTGTTCCTTGTTCT 207405 29 100.0 32 ............................. CCGACCCCGGCTGAGTTACTCGAATTGGCCGA 207344 29 100.0 32 ............................. GGGGATACCGCAAACGCTCTGAGAACAGTTTT 207283 29 100.0 32 ............................. TTTTTGTTGCGAGCCATTACCGAGCCTCTTTC 207222 29 100.0 32 ............................. GCCGTTCTATGAATTTGTCGGCTTGTGTATCC 207161 29 100.0 32 ............................. GCTGGGTGAATTAATTTTCATAACTTCCTCAT 207100 29 100.0 32 ............................. GCCAGTTTTACCACAGGATGAGAGGGCAGGGC 207039 29 100.0 32 ............................. ACGTTTAGCCGGAAAGTAAGCAACGATCCCCA 206978 29 100.0 32 ............................. GCGACTCAATCAACACGTCCGGTGCTCAGTGG 206917 29 100.0 32 ............................. TATGCAGGGCGTTTGCCCCCCTCCTGAATAAA 206856 29 100.0 32 ............................. TTAGGCATTGAATATGATACAGAAGCCCATGC 206795 29 96.6 32 ............................C CCGTCTGCGCAAGGCCTAAAAGGTCTCGTCCC 206734 29 96.6 32 ............................C CACGCATTGACGCCAGTTACAAAGCCGAGATC 206673 29 100.0 32 ............................. GCCAACGGGACACCATGGTTTTATAGCCCCAA 206612 29 100.0 32 ............................. CGATTCGGGCTCGCTCCTGCAGTTCTGGGCTA 206551 29 100.0 32 ............................. TGATCAGGTCGGTGGGGCTATAGCTTATAAGA 206490 29 100.0 32 ............................. TTCTTGATCCGCCCACACCTTCAAGAGGTAAT 206429 29 100.0 32 ............................. CCATCAGCCGTTGGCTGCCATGCATCAAGGGC 206368 29 100.0 32 ............................. GTGACAACCTCTATTCTGTATTGCAGCAATGG 206307 29 100.0 32 ............................. GCGTTGCCGCGCTTTTTAAATCAGATGCCAAC 206246 29 100.0 32 ............................. TTCTGGGGCGATAATGGAGGGTTTTTCTGATG 206185 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 61 29 99.8 32 ATGTTCCCCGCCCTCGCGGGGATGAACCG # Left flank : TTCTGGACGGAGACTGTCCGTGCTGTCTTAGGTGAGGGGCGCGACCGTAGCCGGCTTGTATATTGTATGGCGTTATTGTTGGAGCTCTTGCGGGGTAAGACCGAAAAGGGAGAGACAATTAAGTTAGAAGAGCCTTTCTTGAATGCCGAGCAGTTAAAAATTGCTGCCTCTGATGATGTTAAGGCGTCTATTAGCTTGCCGGCGTTTGATACATGGCGTGATTTGCTTACGCCAGAGATTGAGCAGGAGATTGCACAGGCGCGCGACGTTATTCGCCAAAAAGGTGTATTGGCGAGCCTACCTGTGTAACGCGTCGCACGGTTGATAGAAGGCTTAGTGAAAGAGGAGAGGGGAAACCTTCTCCTCTTTTTTATGGGATGGATGTAGGAGGTAGAAAATTGAGAAAAAGCTTGTAAGGAAAAGGATATTAAATTTATATTTAAGTTGGTACGGCCTTTGACATATGAATTATGTTTATAATACAAGTAGTTCTAGGAAGT # Right flank : CAGAACGGCAGAAGCGGGAAGAGGCGGTAGCAATTGGTAACTTTCAGAGGAAGAATAGGCATAAAAACAACTAAAATTCATCGTTATTAAAAAAACAACAAAATAATGAGTTGATTTTTGCACCAGATTTGACATGCTCCCTGCATGACGATGAAGCCCTTCTCTTATCTGCCGATTATGATGCGGACAGGCCAACGCGATGCCCTTCTCATTGGGGGGGGGCAGGTGGCGGTGCAGAAGATGCGCTTGCTTAAAGGGCGGTGCCGGCGGCTTCATATTTGGGCGGAGAGCGTGCATCCTGAGCTAGAGGCTCTCATTGCGCAGGGGCAGGCGGTGTTTCGGCAAGGGCGTGTTGAGGAGCAAGCCCTGCGGGAGATATTGCCGGAGATGGCTGTAGTCTTTGCCGCTACGGATGATGAGGCTGTTAATGAGATGGTGTCGCGGCAGGCTCATGCGTTGCGTGTGCCTGTATGCGTGGTGGATAATCAAGAGCTTTCCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCCCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 77286-75435 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJG01000006.1 Parasaccharibacter apium strain AS1 Contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77285 29 100.0 32 ............................. GCGTATTCTTCCATGAAAGCCCCAAATGCCAT 77224 29 96.6 32 ............................C GCGCATTAGCCCGAAAGCTCGATTCCTGATTC 77163 29 100.0 32 ............................. GCCGCCCTACGGTTCAAATTCAATCTCGGCTA 77102 29 100.0 32 ............................. ATTCATTGGCTGTATTCGACAGGTATAGCCTC 77041 29 100.0 32 ............................. GAGATACGCACGCCCGGCGGCGGTGTTATCAT 76980 29 100.0 30 ............................. ATGTGAAAAAGGTTTTTCCGATAGCGAAAA 76921 29 100.0 32 ............................. AAACTCCCTTTGGCAATGGCAGTGAAGTTCAC 76860 29 100.0 32 ............................. CAGCACCATGACATGCTGATGCAGGTTTTCTA 76799 29 100.0 30 ............................. GATTTCCTTTTTTTATACGCAATGTAAATA 76740 29 100.0 31 ............................. GCTATTTTTATTCTTGCAAAGTCATGGGGCG 76680 29 100.0 32 ............................. GCGCTGGCAGAGGAAATAAGGAAAGCCTATCA 76619 29 100.0 32 ............................. GGCTGCCTTCTCAACAACTAGCTGCCCTGCGG 76558 28 96.6 32 ..............-.............. GCTGACCAGCCCATCTCGGGACGCTTTTTTAA 76498 29 100.0 31 ............................. GGGCATATTCTTTATACAGAAAAGCGGAAAA 76438 28 96.6 32 ..............-.............. TCAAAAGGCAGAGTAAGCCCATTACCTATTGA 76378 29 100.0 32 ............................. ACTGTGAAAGGTTTTGAACCTCGTTTTGATTA 76317 29 100.0 32 ............................. GAAGACCGTTTTATTTGCCTACGTCAATATTT 76256 29 96.6 32 ............................A ATATCTAGATTAAGGGGATTGCTCGTTTCGTC 76195 29 96.6 32 ............................T TAGTACGGAGGTGCAACGAGCTAAACAAGCGG 76134 29 100.0 32 ............................. TCAAGAAAACCCCTGACAAATATCGAGATTGT 76073 29 100.0 32 ............................. ATCAGGACGCAACTGTTCACGTGGAATGCCCG 76012 29 100.0 32 ............................. GGGGTATTCATGAGCATTATGGGCTTGTGACA 75951 29 100.0 32 ............................. CTGAAAGGCAAGCGGCCGATTCCCGCGTGGAT 75890 29 100.0 32 ............................. AAGGGGAGAATCTGTTCCCTCTGGCGAAAATA 75829 29 100.0 32 ............................. GGGTACAGGATGGCAAAATCGTGCCCTACACC 75768 29 100.0 32 ............................. CTACCGTGGCCCCCGCAACGTGGTGTCCATCC 75707 29 100.0 32 ............................. CTGGCCCGGAATAGCGGGGACATTGCCAGCAT 75646 29 100.0 32 ............................. GCCGAGTTTTTCGCATCATATTCACAGATGAA 75585 29 100.0 32 ............................. TCCCCGTCCACCTCAGTGCGTCCGGCACGCCC 75524 29 100.0 32 ............................. TCCACACTATTAGCAACGTTGTTGGCGCAAAC 75463 29 79.3 0 ...C......T...A.........G.TT. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.8 32 ATGTTCCCCGCCCCCGCGGGGATGAACCG # Left flank : TTGTTGCAGAAGATTATCCCTACCATAGAGGAGGTTCTCTCCGCTGGTGGCTTGCCTCGGCCTGACCCTCCGCCAGAGGCCGTACCCGTCGCGTTTGAGGATGAACCCTTTGGCGACCCCGGGCACCGCTAATGCTTGTTGTCGTGGTTACGAATGCCCCGCCACGCTTGCGTGGTCGCCTTGCCGCTTGGTTGGTGGAGATACGCGCTGGTGTTTATGTGGGTGATTACTCTGCCCGCACACGGGAGATGATATGGGAGCAAGTGCTCGCTGGCTTAGGGCCGGGAGATGCTGTCATGGTCTGGCATGTGCCTAACGACCAAGGCTATGCCTTTCGCACCGCAGGGCGGAACCGCCGCATGCCCGTTGATTTTGATGGGTTAGAGCTTGTCTCGTTTCGCCCGGAACAGGAGGGAGGTGATAATTCTTAAAATATAATTTATGTTGGTACGCTCTTTGACAATTGAAAAAGATTTATAATACAGTTGGTTTTAAGAAGT # Right flank : TGATGCAGTAGTTTTTTAGAGATTGGGGGCCGGTATCCCCCGCTTTCGCGGGAGATACCGGTGCTTCAGGCGTTAGGGGCCGCTCTGAAGTCACCCACTGATTAAATGTTTGTAGGTTCAGTGGAGAGATTGTTTTTTAACCGAAGCGATCTTTCCACCCCACGTATTATGGTTTCGCAAGTCATACCTTTCAAGATTTGTTTGCTGCGTTCTTGTACATAAATCGTGAAGGTCGATCTTTTGACCCTTTGGGATCTGGCAGACTCATATTCATAATTACCGAGGGTCGTTGCTTAATCGTCAGTTGTGATGGGGTGTGGGATTTGGCCGCCAAAGCCATTCTAGGGCTTCTGGGAGGGTTTGGTCTATTGTGGGGCCATCGACATGCTGGGCGTTGCGTGAGATGATAAATTGATACGCATAGCCTTTTGCCGCAAGGACACGGGCGAGATTCTCGCCAGCGAGAAACCAATCATGCATCCCATCAGGCATAGGGCGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCCCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //