Array 1 200776-201901 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAQM01000003.1 Salmonella enterica subsp. enterica strain CFSAN058529 SRR6921405_NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200776 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 200837 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 200898 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 200959 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 201020 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 201081 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 201142 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 201203 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 201264 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 201325 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 201386 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 201447 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 201508 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 201569 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 201630 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 201691 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 201752 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 201813 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 201874 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 218160-219961 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAQM01000003.1 Salmonella enterica subsp. enterica strain CFSAN058529 SRR6921405_NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218160 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 218221 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 218282 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 218343 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 218405 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 218466 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 218527 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 218588 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 218649 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 218710 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 218771 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 218833 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 218894 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 218956 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 219017 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 219078 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 219139 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 219200 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 219261 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 219322 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 219383 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 219444 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 219505 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 219566 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 219627 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 219688 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 219749 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 219810 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 219871 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 219932 29 89.7 0 A...........TC............... | A [219958] ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.2 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //