Array 1 166823-167451 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENG01000004.1 Pectobacterium parmentieri CFIA1002 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 166823 28 100.0 32 ............................ TTTGAGAAGTAGTTCAGCGTTGGCGCGAGCGT 166883 28 100.0 32 ............................ TCAGGGGGGAACGCTTCGACCGCATCATAGGA 166943 28 100.0 32 ............................ AATATCAGGTTTTCGGATTCCCTGAATACATC 167003 28 100.0 32 ............................ AGCAATCCGAGCAATTGGAGGCAAACCATCAG 167063 28 100.0 32 ............................ TGCCAGTTCAGATGTTGGCATCGCACCAATTG 167123 28 100.0 32 ............................ GTTCTCCGCTGGCTGCGAGCGCTCAACGTACC 167183 28 100.0 32 ............................ ACACGATAGCGTTTCAGCTTGCCGCCCTCTTT 167243 28 100.0 32 ............................ CACTCTTGCCACTCTTTAGAGAAGGGGCAATC 167303 28 100.0 32 ............................ AAAGAATCAACTGGCCTTCTTTAATACGGTAG 167363 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 167423 28 85.7 0 A...........GC..........A... | G [167448] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCACTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTTGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 184719-185707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENG01000004.1 Pectobacterium parmentieri CFIA1002 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 184719 28 100.0 32 ............................ AAGGTGCCGAACCCCTTGACCGATAATGACTT 184779 28 100.0 32 ............................ AGCGTGCATTAATGACGATGGCAAACAGTCAG 184839 28 100.0 32 ............................ ACAAAGAATGCCCGAAATGCAAAGGGAATGGA 184899 28 100.0 33 ............................ CGGGAAAAATTTCTGGCCGAAAGCCTCAATCAT 184960 28 100.0 32 ............................ TTTGGCCACCAGTGCCGGAGCTTCGCCACCGA 185020 28 100.0 32 ............................ TGTGGGCGCGGGCGGCGCTTTCCGCTCTCCGG 185080 28 100.0 32 ............................ ACCTGATAGAAGTTCATGCTTGTGGAAAGAAT 185140 28 100.0 32 ............................ ATCGGGGCCTCATGCACCGCCGGATCATAAGC 185200 28 100.0 32 ............................ CAAATCGGCGTTCGACTCCCACGCATCGGTTT 185260 28 96.4 32 .............T.............. ACGTAGCCAAGACTATCGCGCGTGAGAACTCC 185320 28 96.4 32 .............T.............. AGTCCTCCTTGTCGTATTTGTTACCGAACCAG 185380 28 96.4 32 .............T.............. AGATACCGAGCCCCTTGACTGCAATTTAGTGC 185440 28 96.4 32 .............T.............. GCGTGCAGTTCGCCAGCGCCGCCCTTGCAACC 185500 28 100.0 32 ............................ TGAATGAAGTGGCCAGCGCCATGGCCACGCAC 185560 28 100.0 32 ............................ ACTGTTATTTCATACGGCACATCAGGTGGCAG 185620 28 100.0 32 ............................ GGCGTTGTCAGCGTAATGTTTCCGCTTCCCGT 185680 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATATCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAATTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTCCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGCCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCTCGTGCCAGAATA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 57168-58417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENG01000005.1 Pectobacterium parmentieri CFIA1002 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57168 29 100.0 32 ............................. AAGAAGAGCGGGAGCATGCAGCATGACCAACA 57229 29 100.0 32 ............................. GCGATCCGATTTGTTGAGTCCAGCAATGGTAA 57290 29 100.0 32 ............................. CGTATCAAACGAGCGTAATCAATACATCCTCG 57351 29 96.6 32 ............................T GGTGCAGCAGCCGGAGCGGCTTCTTTCTTCTC 57412 29 100.0 32 ............................. ATATTGTTTAAATGTGGCCTTATTATCATTAT 57473 29 100.0 32 ............................. TATTACCAGAACGGCGCACACGCGGGTTACAT 57534 29 96.6 32 ............................A TCTGTCATTGGCTGTCGGGGAGGTTCACTGCC 57595 29 100.0 32 ............................. CGCCGAGGCATCGATAACGAGGCGTACCACCA 57656 29 100.0 32 ............................. CCGTGATATGTGTCGCTATGCCTGCGTGCCAC 57717 29 100.0 32 ............................. CCAGATCGATTTCGGTGAATTTATCGAAAACC 57778 29 100.0 32 ............................. AACTGCTGCCCAACGGTCAGGCGGCGCGAGCT 57839 29 100.0 32 ............................. GTGTTCATTGCGTTGTAGCTCCTTTGGATAGT 57900 29 100.0 32 ............................. GCTAGATGAGTAGCCTTTGTTGCTGTAGCGGC 57961 29 100.0 32 ............................. CATGTCGATGTGCAGGCATTTAAAGAGAAGGT 58022 29 100.0 32 ............................. CAAGTGGCGTTGATTCTGACGCAAAAGAAAAA 58083 29 100.0 32 ............................. TGGTAAGACATTCAACTATCAGGTGGGTGATC 58144 29 100.0 32 ............................. CTCTCGAAAACGCTACTGGCGATTATGCAGAT 58205 29 100.0 32 ............................. GAAGTTATTGAATTGCTCCGGTGATTGCGCCC 58266 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 58328 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 58389 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCTGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAGTACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60288-60682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENG01000005.1 Pectobacterium parmentieri CFIA1002 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60288 29 100.0 32 ............................. TTGCTGTCTTTTCCATTTCACACCTCGTTAAT 60349 29 100.0 32 ............................. GCTGGATTTCTGGTTAACTTGAATTCGGCGGT 60410 29 100.0 32 ............................. GTCAGGCCGACTTTGCTGAATTTATAGAAAAC 60471 29 100.0 32 ............................. CCAATGATGCATTCATGCGTGATATCAAACCC 60532 29 96.6 32 .............T............... CTAAGTGAGACTCGAAAGCGTAGCAAAATTTC 60593 29 100.0 32 ............................. TTGCAGAGACGATAACAAGCATCGCATACGAA 60654 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTTTCCCGCATTCTAAATGGTGAGCGTACACTAACGCTTGATCACATGAGAGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTATTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTAATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GTTATTGAATGTTGTGATTGCCGGAATCAGATCGTGTTCCCCGCGCGGGGTCAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //