Array 1 1011453-1010204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009312.1 Lawsonella clevelandensis strain X1036 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1011452 29 100.0 32 ............................. CATAGTCGCGGGCCTCCCACTCAGCAGCAGAA 1011391 29 100.0 32 ............................. CCCGTGGGATGGGTATTCCGCTATGGCGAATG 1011330 29 100.0 32 ............................. CCTTGCGCGTGCCCCATAGTCCTACTCTTTCC 1011269 29 96.6 32 ............................C ACCATCTACCTAGAAGCACGGCAACCGCACTG 1011208 29 96.6 32 ............................C GAAGTTTTTCTTGTACATGGTCCATGCACCAG 1011147 29 96.6 32 ............................C GCGTGGGCTGAGATTACCGGTAAGCCTGCTGA 1011086 29 100.0 32 ............................. CAGAGTTCATCACAGAGAAAGAAGCGAAAATA 1011025 29 100.0 32 ............................. CGGCATATCCCGCATAGTCGCGTGTTCCAGGC 1010964 29 100.0 32 ............................. CCACCGTCACGCCCACCATTGATTTCATTGAG 1010903 29 96.6 32 .........................T... AAACAGAAGCCGCTGAGCCAGAGGAAACAGAA 1010842 29 96.6 32 ............................C TCGGCGGCGGTATCCTCTGTCATATCCAGGGC 1010781 29 96.6 32 ............................C ACCGCCCCTACCGGGCACCATCGTCGCCACAG 1010720 29 100.0 32 ............................. GTTCCCCGAAAGTCGGAGGAACTGGCAGAAGA 1010659 29 96.6 32 ............................C CCTTACCTGCTCTTCGGTTACGTCAAACGCAT 1010598 29 100.0 32 ............................. ACTCCAGTGCGCCGTCCTCCTCCTCACTCCTC 1010537 29 100.0 32 ............................. GTTCCCCGAAAGTCGGAGGAACTGGCAGAAGA 1010476 29 100.0 32 ............................. GAATACATCATGACCATCAAATTCGGCCAGAT 1010415 29 100.0 32 ............................. ATTGGGCGCATCGTGTTTCGCTCGAAGAGTAC 1010354 29 96.6 32 ............................C CAACTGCTCGGCCAAGAACAGTATCGGGGTTC 1010293 29 93.1 32 .........................A..C CAGCTTTAGACGTGCCCTCACCAATCCAGGTG 1010232 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 ATGTGCCCCGCGCCAGCGGGGATGAGCCG # Left flank : CAGATTGTGGAGACCTGTTTTTATGGGATGAACTTCAAGCTGTTCCAGCTGGCGTAAATTATGAGGAACAGACAGCATCATGATGGTACTTGTCATAACCGCGTGTCCCGCTGGGTTACGAGGTGACCTCACAAAATGGGTACTGGAAATAGCCCCTGGTGTTTTCGTAGGAAATCCTGGTGGAAGAATTCGGGATTTACTCTGGGAACGAACCACTCAACTGTGTCGAGATGGAAGGGCATTGTTGGTCTTTTCCACGAATAATGAGCAGCACATGGAATTCCGCACTCACAATCATGATTGGATCCCTACTGATTTTGATGGCATTACTCTCATGATGCGGCCCGATAATAGGACTACCAATAACAGGCCTCGCAATGGATGGGCTACTGCTCGGCGTCTTCGCAAGTACCGGTAAGTAACATAAGAATATCCGTGTCGCTTATTCTGAGTTAAATGTAAAATGAGCACTGTCTTGCTGTAAATGCAGATCATCAAGT # Right flank : GATAAAGTATGGGCGCGTACCCTGGTCTACGCCGCCAATGGCCTCCCCTGCTACGTCACGCAGGACTACATCAACAAAAGCCGGCACGCCTGCCGCCACAGCCACATCCGCATGTGCGCATGGAACCCGCAGGAATGTACTCTCGCAGCATTTGCTCACAACATCCCTGCCGCCATCCGCCCCGCGCTCATGGAAGCCCTCTACAAACAATGTGACTTCGACAACATTGCCCGAGTTCTAGCCCCAGAAAACTAGAAGATCGTGAATACCCCGCCACCATGCGGGGTATTCCCTTACCGAGAAGAGCCGATATGAATATAAATGCAGAATTTCGCGCACTAAAACAGCTTAGCGGGCTAACATCGCAGCACATCGCGGATAAATTCGACGTCGGACTACGCACTGCACAGCGCTATGAAACTGAATACACGCCCCGCTCCGAAATTATGGAGTATCTGCGGAGCATCGTGGAGGACGACACCCAGTACGTCGAAGAGGTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTGCCCCGCGCCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //