Array 1 176376-181925 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJX01000061.1 Erwinia amylovora strain MANB02-1 NODE_6_length_225050_cov_63.1485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 176376 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 176437 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 176498 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 176559 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 176620 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 176681 29 100.0 32 ............................. ATGGTGTCGCAAAGTGTCGGGCCGTGAAGGTA 176742 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 176803 29 100.0 32 ............................. CGGCGCTGTCTATCCCCTGCGCGATCCCCTTT 176864 29 100.0 32 ............................. ACCCAGCTAGGGAATGTAGGTCTAGTCATGAA 176925 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 176986 29 100.0 32 ............................. GACGCTATAAGCCAGGCAAAAAGCCAGTATGA 177047 29 100.0 32 ............................. CCAGGATAGTCCGTTTTGATACCGTTAATCAG 177108 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 177169 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 177230 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 177291 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 177352 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 177413 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 177474 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 177535 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 177596 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 177657 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 177718 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 177779 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 177840 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 177901 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 177962 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 178023 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 178084 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 178145 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 178206 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 178267 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 178328 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 178389 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 178450 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 178511 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 178572 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 178633 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 178694 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 178755 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 178816 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 178877 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 178938 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 178999 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 179060 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 179121 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 179182 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 179243 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 179304 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 179365 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 179426 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 179487 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 179548 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 179609 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 179670 29 100.0 32 ............................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 179731 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 179792 29 100.0 32 ............................. CCGGAGACAGTGTTGAAGCCGCAGTCACTCTA 179853 29 100.0 32 ............................. AGTGCTGAGTGTGTTAGTAGACAACCGGCCTT 179914 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 179975 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 180036 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 180097 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 180158 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 180219 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 180280 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 180341 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 180402 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 180463 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 180524 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 180585 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 180646 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 180707 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 180768 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 180829 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 180890 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 180951 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 181012 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 181073 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 181134 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 181195 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 181256 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 181317 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 181378 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 181470 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 181531 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 181592 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 181653 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 181714 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 181775 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 181836 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 181897 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 91 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190965-192764 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJX01000061.1 Erwinia amylovora strain MANB02-1 NODE_6_length_225050_cov_63.1485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 190965 29 100.0 32 ............................. CGGGCGAGTTTTTCAGGATGCGTCTCATTGAA 191026 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 191087 29 100.0 32 ............................. AACCTTTTACCATTGTCATAACAATATCTTCA 191148 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 191209 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 191270 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 191331 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 191392 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 191453 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 191514 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 191575 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 191636 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 191698 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 191759 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 191820 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 191881 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 191942 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 192003 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 192064 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 192125 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 192187 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 192248 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 192309 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 192370 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 192431 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 192492 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 192553 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 192614 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 192675 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 192736 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.1 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 202226-202554 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJX01000061.1 Erwinia amylovora strain MANB02-1 NODE_6_length_225050_cov_63.1485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 202226 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 202286 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 202346 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 202406 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 202466 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 202527 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //