Array 1 88334-89869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVKP010000003.1 Escherichia coli strain KPC1628 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88334 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 88395 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 88456 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 88517 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 88578 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 88639 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 88700 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 88761 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 88822 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 88883 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 88944 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 89005 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [89029] Deletion [89046] 89047 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 89108 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 89169 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 89230 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 89291 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 89352 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 89413 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 89474 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 89535 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 89597 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 89658 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 89719 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 89780 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 89841 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115419-116301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVKP010000003.1 Escherichia coli strain KPC1628 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115419 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 115480 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 115541 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 115602 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 115663 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 115724 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 115785 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 115846 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 115907 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 115968 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 116029 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 116090 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 116151 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 116212 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 116273 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //