Array 1 519-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXR01000015.1 Streptococcus uberis strain OLC4459-A7 k127_207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 518 36 100.0 30 .................................... ATTTAAAAGCTGAGTTAGATACTATCAAAA 452 36 100.0 30 .................................... CAATTATTTCTGATGTCATTGTCTCTGGTA 386 36 100.0 30 .................................... CAGTTATTGACAGTCACACTTCTTCAATCT 320 36 100.0 30 .................................... CAATCATTATTCCAATATAACACAATACAA 254 36 100.0 29 .................................... ATTTTTTAGATGAAACAAGATTGAATCTG 189 36 100.0 30 .................................... TAACTATTGTCGGGTCAATGATACCAGATA 123 36 100.0 30 .................................... GTATATTAAAATTTTCAGAAGTTACAAAAG 57 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : CTCGGCGAGCCCACCTTTACGA # Right flank : CTTTACAAAAAAGGAATTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 850-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXR01000016.1 Streptococcus uberis strain OLC4459-A7 k127_208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 849 36 100.0 30 .................................... ACTATTGGTATATTGTCCGTGGAATACTTG 783 36 100.0 30 .................................... TCACGACTTAACACAGTAGTTGCGAGTTCT 717 36 100.0 30 .................................... CCTTTTCTTTCTCTTGTTGGTTTTGATATT 651 36 100.0 30 .................................... TTAAGAGCTCGTTGAAGATTATCATATTCT 585 36 100.0 30 .................................... GCTAGAGCAACATTTCGTCCGCCTTCAATA 519 36 100.0 30 .................................... CACAACTACATCAAGTAAAAAAGAGACTAC 453 36 100.0 30 .................................... TTGGTCTTAACTTGATTGATAAGGATAATG 387 36 100.0 30 .................................... ATAAACTCATTTGTTCCATCTTCACCGTTT 321 36 100.0 30 .................................... AGAGTCAAGAATTATGCAACTGGATACAGT 255 36 100.0 30 .................................... ATATCCAAGAAGATATCAGAGATAGGTTTG 189 36 100.0 30 .................................... TATTTTGCTTTATTCCAATGGGAGCGGATA 123 36 100.0 30 .................................... GTATATTAAAATTTTCAGAAGTTACAAAAG 57 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : GATGAAGTACCTGAAAAATATCGT # Right flank : CTTTACAAAAAAGGAATTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 87962-88459 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXR01000005.1 Streptococcus uberis strain OLC4459-A7 k127_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87962 36 100.0 30 .................................... ATGCCCTGCCACGCCTTTTGCCAATTTCCA 88028 36 100.0 30 .................................... ATCTCTACATTGATGCATTAGGTGGTAAGA 88094 36 100.0 30 .................................... CTTATATAGGTTTCTTCAAAGGAACATTCT 88160 36 100.0 30 .................................... CCCAATGCTTGATGAAAAAACACCATATGC 88226 36 100.0 30 .................................... AATTGACTAGTGTTTACAAATACCATTCAA 88292 36 100.0 30 .................................... AAGACCCCTCGGCGAGCCCACCTTTACGAA 88358 36 100.0 30 .................................... ATTTAAAAGCTGAGTTAGATACTATCAAAA 88424 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGATATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGCTTGTCTATAAGAGATATGGTAACTATCAAAATATTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAAATAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTGATTTGAG # Right flank : CA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 26-655 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXR01000004.1 Streptococcus uberis strain OLC4459-A7 k127_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 .................................... ACTATTGGTATATTGTCCGTGGAATACTTG 92 36 100.0 30 .................................... CAGGTCATACTGGTGTTGTAACTGGTATAG 158 36 100.0 30 .................................... TAGGGTCAATCAACTTTCCAAACCTTTTCT 224 36 100.0 30 .................................... ATCTTGAGACTTTGAAAGAGGCAACAACCC 290 36 100.0 30 .................................... AATTATTGAAGGAATCACATAATCTTAATC 356 36 100.0 30 .................................... TTGATGGATTATGGTTATTATATCCAGCGT 422 36 97.2 30 ........G........................... GTGGAGCTTACGGTTCAACTATACAAGCTT 488 36 100.0 30 .................................... TCATTTTTATTCTCCGATTTCTAATTCTCC 554 36 100.0 30 .................................... TCATCTATATTCCTCTACTTGATTCACTAA 620 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : GATGAAGTACCTGAAAAATATCGTGG # Right flank : CGGCAAATAATTCCATATAACACAAAGAAAACAGACACTTTCTAGAGTGTCTGTTTTTGCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATAAAATAGCCTTAAAAATGTATGTCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGATGTTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGCCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 650-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXR01000033.1 Streptococcus uberis strain OLC4459-A7 k127_135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 649 36 100.0 30 .................................... CAAAGCTTTTAGGGTCTATCAGTCCACTAA 583 36 100.0 30 .................................... CTGCAATTGCAGAATTTGAACGAGAGCAAA 517 36 100.0 30 .................................... CGTTTTCTTCTTTATCTGATACACTCATTG 451 36 100.0 30 .................................... ATATAACGAATCAGCTAAATTTAACAGGTA 385 36 100.0 30 .................................... ACATTAATAACATAGTCTAATTCACTTACG 319 36 100.0 29 .................................... ATAGCATGACAGATAATGAAGAAGTTGTT 254 36 100.0 30 .................................... AACAGAAAATTTTAAACAAGATGTAACGCT 188 36 100.0 30 .................................... CAGGTGTAAGAATATGGAATTATGAAGATA 122 36 100.0 30 .................................... CGCTTTTAAGGGTAGCTAGGTAACCATACA 56 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : CTGATGAATTTAGCGGTTGAATCG # Right flank : CCTGTCTCTTATACACATCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //