Array 1 38546-37977 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSEB01000009.1 Aggregatibacter actinomycetemcomitans strain PN_559 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 38545 33 97.0 35 ................................C TCTTTAGGAATAATTTGATTGTATTTTTCACATAA 38477 33 100.0 36 ................................. TGCCAAGGCGGCTTCGCTTCCTGCATGACCGCCACC 38408 33 100.0 34 ................................. AGTAATATCAACTGTTGAGATACATTAATTATTA 38341 33 100.0 34 ................................. TTACATGTAATGCTAATAAAGGTGTATTAAAATC 38274 33 100.0 32 ................................. CAAAAATATCTCCAAATCCATATTTTAATTTT 38209 33 100.0 35 ................................. ATCAAGGCAATGGGGTTGTTGACAGCAGCTACTAA 38141 33 97.0 33 ................................C TTATGTAGGTTATATATTAGCACCTGTTGCTGC 38075 33 97.0 33 ................................A CTACCGGCACCTGGAATTGGTTAGCCAATACCC 38009 33 78.8 0 .......T.....CA.....C...T......TA | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 96.6 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : GGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTCA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 53235-53005 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSEB01000003.1 Aggregatibacter actinomycetemcomitans strain PN_559 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 53234 32 100.0 34 ................................ TTGCAAGGAACATTTTGGAGGTAGTTTAGATGGT 53168 32 100.0 33 ................................ TTGGTCTAGGTGAACCGATTAAAATCGGTCACC 53103 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 53036 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.1 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTAT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 133810-140440 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSEB01000003.1 Aggregatibacter actinomycetemcomitans strain PN_559 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133810 28 100.0 32 ............................ ACGCAAATATTCAACCATTCTATTTTCTTCTA 133870 28 100.0 32 ............................ AAATTACAGCTAATTCATTTTTATGTACTTTT 133930 28 100.0 32 ............................ TGTGTAATTAAAGGCAGTTTTGAGAGAAGTTA 133990 28 100.0 32 ............................ CAAGCCAACAAAACTATGTGCCATTGGTTGTT 134050 28 100.0 32 ............................ AATTAATTATATAATTTCCATGAATTTTGGTC 134110 28 100.0 32 ............................ TTTATTTTTAAATAACAAAATTTTTTGTATAT 134170 28 100.0 32 ............................ ATTTGTAGGCAGTATCTTAAAGTATTGTTTTC 134230 28 100.0 32 ............................ AAGAAGAAAGTATCAATGCTTTACTTTCATAT 134290 28 100.0 32 ............................ TGAAGCAAACCAATTTGATACATTTGCGATTG 134350 28 100.0 32 ............................ AGTATCCTAAGTTATTGATATTAATTTTGTTA 134410 28 100.0 32 ............................ TGAAACAAGTTCTCCCAAGCCAACAAAACTAT 134470 28 100.0 32 ............................ CGTCTTAATGGCGGGATTTTTTTTGTCTAAAC 134530 28 100.0 32 ............................ AACAGACTCAGCGCCTATTTCTCGATTCCGGT 134590 28 100.0 32 ............................ ATTTAGAAATGATAAGAAAACCTGTAAAATTG 134650 28 100.0 32 ............................ CTACTGCTTCACTTCAAAATCGCAAAATCGCC 134710 28 100.0 32 ............................ TAGTTTGCGATAATGTATGCCCACAACAGCAG 134770 28 100.0 32 ............................ TTGAATACTTAATAAACCATTTTCAATAGCTA 134830 28 100.0 32 ............................ AAAAAGCCGAACGCGAAGATTATATAAATCGT 134890 28 100.0 32 ............................ TGATATGGGTTTTATTATTAATACAATTTTAT 134950 28 100.0 32 ............................ TTTCTTTGTAGGCAATCTTGGCTGTTTTTGGA 135010 28 100.0 32 ............................ AAATAATTAAATGGGTTAGGGAATTAATAAAT 135070 28 100.0 32 ............................ ATTTAACGAAAATCACATGAATGTACAAGTAC 135130 28 100.0 32 ............................ AATTATTCGTAGTGATTTTGTTATTCCCCACA 135190 28 100.0 32 ............................ ATTTAAACACACCTTTTAGATTGAAATAGTGT 135250 28 100.0 32 ............................ TTAGCAATGTGTGAGTTGACTTGTTGATTTGA 135310 28 100.0 32 ............................ ATTATCAGTTTTTACAAATTTCCAACCTATCC 135370 28 100.0 32 ............................ AAGAAGCTATTAGGAGGCTTAAAATGAAAAGA 135430 28 100.0 32 ............................ AATAAATTGTTTGGTTTGTATTTAATTTAAAC 135490 28 100.0 32 ............................ TTTGAATGTTGGCAAGCTATATTATGAATTTG 135550 28 100.0 32 ............................ TTAACAATCGCAACATCAAAACATATAAGTTT 135610 28 100.0 32 ............................ ATCATGAAAAGCGCTGGAATAAGTGTGTAATG 135670 28 100.0 32 ............................ TACAATGTATCAGGGACCGGTTTAAATAATTA 135730 28 100.0 32 ............................ TTTATAAACGAAAGTACCAATCTTATTGTTGA 135790 28 100.0 32 ............................ TATAGAAGGTAGTGAGGCAGAATGTTATTCAG 135850 28 100.0 32 ............................ TTTAAGTCGTCAATTGATGACAGAAATTTTAA 135910 28 100.0 32 ............................ TAATCGGTCACGAATGTCGAAGAAAATTATGG 135970 28 100.0 32 ............................ CAACCAAGACCAAAAATTTTCAGATTATGAAG 136030 28 100.0 32 ............................ TGATGGCTTTGGCGGTTCCACTCAAATTGAAA 136090 28 100.0 32 ............................ ATCAGGCTGTTTACATTTTTTATAACCGAAAC 136150 28 100.0 32 ............................ ATTCAAAATTTGCTTTGCTTGTGACATATCTT 136210 28 100.0 32 ............................ TGATGAAAAAATACCAAGTGGCGCATTTGGCC 136270 28 100.0 32 ............................ AATTATATGATTGATCATGCAAATTCATGGAA 136330 28 100.0 33 ............................ CTGTACCAGATATATTGTAGGCACGACCACATA 136391 28 100.0 32 ............................ TTCTATCTGCTCTCTTTGATACAAATAATAGC 136451 28 100.0 32 ............................ CGTGAAAATTTGATATTTTTGAGAACCTTCTA 136511 28 100.0 32 ............................ TAATGTTTCATAGAGATTGATAAAACGTTGTT 136571 28 100.0 32 ............................ TGAAATTGTCTCAGTAAGTTTTTAAGGTAAAT 136631 28 100.0 32 ............................ AGAAGCACCAGAAGATTAATTAGTAATATTAA 136691 28 100.0 32 ............................ ACAATATTCAAACGCGAAATTAGCCCTTCTTC 136751 28 100.0 32 ............................ TACCTAAAGCAGATATACGAAAGATTCGTTTT 136811 28 100.0 32 ............................ TACAAAGGAAAGATAGTGGAAATAAAGTACCT 136871 28 100.0 32 ............................ TGTTGGCTATGCTACCCTACTGCTTTAATTGA 136931 28 100.0 32 ............................ GATAGCCTTGTTGAAGAAGGGCTAATTTCGCG 136991 28 100.0 32 ............................ AGAAATGGTAAATGGAATTGCTAAAATACCAC 137051 28 100.0 32 ............................ TGCGTTTTCGCCAAATTCTTGATCTAAATCTT 137111 28 100.0 32 ............................ AAGAAAACAAGCAAGTGTGACTAATCCTTCAA 137171 28 100.0 32 ............................ ACAATATTGTCCCCCTGATATGGGTTTTATTA 137231 28 100.0 32 ............................ ATTCAAACGCGAGATTAGCCCTTCTTCAACAA 137291 28 100.0 32 ............................ ACATCACGCCCACAACAACTTATTTCAATAAA 137351 28 100.0 32 ............................ ACATCACGCCCACAACAACTTATTTCAATAAA 137411 28 100.0 32 ............................ TTCATCGAATGAGCTATTCATTTTATAGTCAC 137471 28 100.0 32 ............................ TTATGCGTTTTGTTATTCGTCGTATTCCGATT 137531 28 100.0 32 ............................ TTAATGTCCTTTCTAAATCGGGAGTTTGCAAA 137591 28 100.0 32 ............................ CATTGCTTTTAGATATTTTTGTCGGTGATAAA 137651 28 100.0 32 ............................ AGAAGCACCAGAAGATTAACTAGTAATATTAA 137711 28 100.0 32 ............................ AATGCCTGTTAGACCCAACAAAACAAAGTAAT 137771 28 100.0 32 ............................ TTGAGCTTGTGTAGTTTTATCGTCATGGTTGA 137831 28 100.0 32 ............................ TGAAGCAAAACAATTTGATACATTTGCGATTG 137891 28 100.0 32 ............................ TGTTCCCGAAACATTGTAGGCACGACCACATA 137951 28 100.0 32 ............................ AAGTGATTAATGTCCAACAAGAAATAGAAGCA 138011 28 100.0 32 ............................ TTTTAATGGAGCAATCAAACTATATGATTTAT 138071 28 100.0 32 ............................ TAATCGCTTTTCAATGTAATGTATGGTTACAC 138131 28 100.0 32 ............................ TTATGAAGAAGCAATGATGGCTTTAATTATTT 138191 28 100.0 32 ............................ TATGCCAATTTTATATTCAGTACTACCAATTA 138251 28 100.0 32 ............................ AAAATGATAACATTCTCAAGTTTTCTGCTCAT 138311 28 100.0 32 ............................ TGTTAGACCTAGCAACACGAAATAATTATTGA 138371 28 100.0 32 ............................ TTAAAGACGAAAACATTCCGGTATGGAATTGT 138431 28 100.0 32 ............................ TCTTTCTTAGGTTTCAGAAGTTGATAAGGAAC 138491 28 100.0 32 ............................ ACAATTAAAACTCCAATTTTGTGCCCTTTTAC 138551 28 100.0 32 ............................ AAAATGATAACATTCTCAAGTTTTCTGCTCAT 138611 28 100.0 32 ............................ AACGATATTACTGTCAATTTTTTTTGTTTCAC 138671 28 100.0 32 ............................ CACCTCGGGGTTCTCTGATTCAATTTTATGAA 138731 28 100.0 32 ............................ ATACAACCGGCAATTCTGTTTTATAAATTTTA 138791 28 100.0 32 ............................ AAAATAAAAAAAAATATTTTTCGTCCGATTTG 138851 28 100.0 32 ............................ TATAATGTATGCCCACGATGGCAGCTGGTACT 138911 28 100.0 32 ............................ TTGCCCTACTTGTGGAACAAAATTCTGTTGAA 138971 28 100.0 32 ............................ TTCAAAATTGGTTAGTCAACAAGGTGTAAAAG 139031 28 100.0 32 ............................ TGTGGATAACTATTCAACATTTTCGATCTAAA 139091 28 100.0 32 ............................ AACTTTTATTTATTTCGATGTCATTTTTCATC 139151 28 100.0 32 ............................ AAGCTTCCAAAATTTTTGAAGTAGCGGCTGCT 139211 28 100.0 32 ............................ TGTAATATAAACATTTGTAAAAAATCCATTTT 139271 28 100.0 32 ............................ TAGCATACCATAATACAAAAACTAATCATGGA 139331 28 100.0 32 ............................ TTTAATAAAAGATTCAATAACTGATCTAGGTA 139391 28 100.0 32 ............................ TAACATTTCATACAGATTCAAGAAACGTTGTT 139451 28 100.0 32 ............................ TTTAAATTTAAAAAATCTATAATTGCTCAAAT 139511 28 100.0 32 ............................ TTTATATTAAAGCTGATTATCTTCTAAGAATT 139571 28 100.0 32 ............................ TCTGAAATAGCTAATATTTCCACCAATAAAAG 139631 28 100.0 32 ............................ AAAAGCGATCGCATGCTCCGCAACTGCAAAAA 139691 28 100.0 32 ............................ AAGATGATAACATTCTGAACTTTTCTGTTCAT 139751 28 100.0 33 ............................ ATTCTTCTACCAGTATTTGAACAATACCTTTTA 139812 28 100.0 32 ............................ ATTGATCAACAATATTTTTCAATGTTTGATAT 139872 28 100.0 32 ............................ ACCAATAAAAATTATCTTGCTTTGTAATATAA 139932 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 139993 28 100.0 32 ............................ TATCATTAATACAGAGTTGAGCATTAATTCTT 140053 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 140113 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 140173 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 140233 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 140293 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 140353 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 140413 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 111 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : ATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //