Array 1 542871-539060 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMKC01000002.1 Sphingomonas sp. Leaf9 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 542870 29 100.0 32 ............................. TGCCAGACGATCCGCGACCTGATCCTGCACGG 542809 29 100.0 32 ............................. CGCGCCAAGACGATGGCGGACATCAACACCGC 542748 29 100.0 32 ............................. ACAAGACGACCACCGTTCACCGGTCTGACGGA 542687 29 100.0 32 ............................. CGTATGATCCGCGAGGCGACCGAATACATCAT 542626 29 100.0 32 ............................. CGTTCCAGCACGACAGTACCGATACCCCTCGC 542565 29 100.0 32 ............................. TACCGGTTCGCGCGGATCACGGTGACCGTAGG 542504 29 100.0 32 ............................. GGCGTTAGCTTCGCCGACTCGATCCACCTCTA 542443 29 100.0 32 ............................. GACTGGGAAGGCACTGATATGACCAAGGACGA 542382 29 96.6 32 ............................G TCAATGCCGCCGGGGTCGAACAACCCGTTCGG 542321 29 100.0 32 ............................. TCGGGGGCGTCGACGGGCTCAATGTCGTGGAT 542260 29 100.0 32 ............................. TACGCCATCGACTTCGATACGGCCCATGGTGG 542199 29 100.0 32 ............................. CGCATCGCCCCGGCTATCGACGGCATCCTCGG 542138 29 100.0 32 ............................. CGGATGGGTCCTGAAAGCCCGCCTCACCGAAT 542077 29 100.0 32 ............................. ACTAGCGTGGGCATCGACTGGTACGTCAAAGA 542016 29 96.6 32 ............................G CGAGTGCGCTGTCAGCGGTGGTTCAAGGATTT 541955 29 100.0 32 ............................. GAGCCGCGTGTTACGATTGATGACAGCGCGAC 541894 29 100.0 32 ............................. GGTCCATCGCCCATGCCGCCGCGTCCCGATGC 541833 29 100.0 32 ............................. CACGGACTGCGGATCAGACGCCGGCACTTGAG 541772 29 100.0 32 ............................. AGGTCGTCCGATCGGCGGGCCAGATCGCCAAC 541711 29 100.0 32 ............................. CCCGGAGGCTCCCCATGCAGACTGACGCAGAG 541650 29 100.0 32 ............................. TCGATGTCGGCATCCAGCGTGGTCGACCGCCC 541589 29 100.0 32 ............................. TTCGACTTTTCCCCGCCGTATCCGGCCGAACA 541528 29 100.0 32 ............................. GGATCGACGGTCAGAACATCGACTTTGCGCTC 541467 29 100.0 32 ............................. GGATCGGGAAGAGGGCTGGTGGGAAACATCAA 541406 29 100.0 32 ............................. GACACGTTGGCCGCCCGCATGTGGCAAGGGAA 541345 29 100.0 32 ............................. AAGAACGCCCTGCGAGTCGCGAGGCGGACGGA 541284 29 100.0 32 ............................. CAGATTGCGGAGGCGGTATGAGCGTTCCGGAA 541223 29 100.0 32 ............................. GCTGGTGGTTGGACAAGGCCGAGGAAGCCCGC 541162 29 100.0 32 ............................. CACCACCTGGCCAGGTGCCGGGCTGGTCGCCG 541101 29 100.0 32 ............................. TACATCGTCGGTTTTGCCAAGCTGGTCGGGGT 541040 29 100.0 32 ............................. TGGACCTGGACGGGGCGGTGTGGAGCATGCCG 540979 29 100.0 32 ............................. ACAATTGACGATGTGATGACGCAGGTTGTCGG 540918 29 100.0 32 ............................. GGCTGCCAATCTCTATCAGTCACCTATTCCTC 540857 29 100.0 32 ............................. GAGGGCGGTCAAGTCGTGCCGCCGGGGCAGGA 540796 29 100.0 32 ............................. TCGCACCAAACCATATCTGGGAGCGGTTTCTA 540735 29 100.0 32 ............................. CCGCCCAGCGGCACGATGCCCGACCTGTAGCC 540674 29 100.0 32 ............................. GTGGACCGGTCATGGTCGCGTGACACCTTCGC 540613 29 100.0 32 ............................. CAGCGCCGGGTGCCTGACGCGCAGATGCCGAC 540552 29 100.0 32 ............................. TGCGCAATCTGCTGGGGGATCTGGAACGGTCG 540491 29 100.0 32 ............................. GAGCCACCGGCATGATCTCGGTAGATCAGGTA 540430 29 100.0 32 ............................. AAATTGCGGGTCGCCTTGTCCTCATGCGTCAG 540369 29 100.0 32 ............................. GGCAATATCGCAGGCCGGGTGGGCACGACTGC 540308 29 100.0 32 ............................. GTCGGTCGTTATGCCAGCGAGGCCATCAAGCA 540247 29 100.0 32 ............................. GACGAGGGGCTGTTCGCATGGCAGCGGACGAA 540186 29 96.6 32 ............................G GTGAAGGGTTTGTCGAATTCGATCGGGAAGCC 540125 29 100.0 32 ............................. GAATCCATGCTCACCGAACAGCGACCCGACGC 540064 29 100.0 32 ............................. TACCGAGCCGGCCCCCGCGCCGGCCAAGGAAA 540003 29 100.0 32 ............................. CTTGCTGCCCATCGACTCATAACCGCCTAGCC 539942 29 100.0 32 ............................. GCTTACCTCCGAAGATCGCGCCCACTTGCTGC 539881 29 100.0 32 ............................. GAGAAGTTGTAATTCGGGGAAGTGCCGTCCCG 539820 29 100.0 32 ............................. TGACTATGGAACTGAAGACGAACGATCTCGCG 539759 29 100.0 32 ............................. CACTCGAAGTCCCGCGTGCCGTTGTCCGTGCT 539698 29 100.0 32 ............................. CTCCCGAAGATTCTGTTCGAGGCGCATATCTT 539637 29 96.6 32 ..T.......................... TGGCGAGCGTCGAGCGCGGCGTTGCCGTAGAA 539576 29 100.0 32 ............................. CGCGCTGTTTCGCGTCGTCGGCGAAGATCACG 539515 29 100.0 32 ............................. TGCCCGGCCGCTGCCCGAACTGCAGCATCGCC 539454 29 100.0 32 ............................. TCGTCGCGGGCTCCGGCGCGCAGGACGTCGGC 539393 29 100.0 32 ............................. GCGCATCACGTCGTGCGGGCCAGATGCTTGCC 539332 29 100.0 32 ............................. GCGCCATCATAGCTTTGGCAGCAGCGAGCAGA 539271 29 96.6 32 ...........G................. GTGTCGGGCACCGGTCTTAATCAATACGCCCT 539210 29 96.6 32 ...........G................. ATCGCGGGCCGCATCGGGTCGACGGCTGCTGC 539149 29 100.0 32 ............................. CTCGGGCGCCTCACCTCCCCGCCTCCCCGCGT 539088 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 63 29 99.6 32 GTCTCCCCCGCACCCGCGGGGATCAACCC # Left flank : ACGGCGCGCCGCCGATCGAACGGCTGGTGCGCAAGCGCGCGGCATTGCTCTTTCGACAGCGCAGCGTGATCCCCGGCATGATCGACCGGATCAAGGCACTGGTGATGCCCGGCGAGGCGGCGGCGACCTGATGCCGCTGACGGTCGTCATCACCCGCGACGTGGAGGACCGCTATCGCGGGTTCCTCGGCTCGGCGATGCTCGAACTGGCCCCCGGCGTCTATGCTCAGCCGCGCATGAGCGCCGGCGTCCGCGGCCGCATCTGGACCGTGGTGGAGGAATGGCACGGCCGGTTGCGGCGCGGCAGCATCGTGATGTGCTGGGCCGAACCCGCATCCGCCGGCGGCCTCGGCCTGTCGGTGCTGGGCGAACCGCCGAAAGACGTAATCTCCCACGACGGCATATTATTGGTCCGCCGCGCCCTGGCCTCCCGCCAGGTTTAACATCATCCTCCCAACAGTCTTTGACATAGTAAACAACTTCCGTAACTTAACGCCTAGA # Right flank : TACGGCCCCTAAACCCCTGCAGCATTTGGCGGCGACCGTACCGGGCCCTTACGACGCTTAATAACAATTGCACGCACTTCTCAGACCCGACCTACGACGACTACGCACCCAAGCATTCAGGGAAATGCAGTTACGAAAGTCATCGGTTCGCCACCGTGCCACCGTTCCCGTACACCGACGGACAGGTCTAATGCACGGATTGCCCCATCGCGAAATGCGCGGCCAACTGCGTTGGTGCCTCGTTGGCGCCGTTCCTGCCTACGGCTTCGCCCAAAGCCGGAAAATCTTGCGCGAGCCCCCCACCATAACCAACCATAAAAGGCCGTGTTCAATCGCATTGACAGATAGCCAAACCAATTCGTCTTAAATCAGCAAAAGCAGTCACGGTAACCATCCGCCGACTTCCGCGACCGGCAGGGCCGCCCTGCCCACCTATTGCGGCGTCTGCACTTCGGCATCCGACATCAGATCACGGCCCTCCAACCATCGCACCACCTCCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCCCGCACCCGCGGGGATCAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //