Array 1 6402-7833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFW010000170.1 Salmonella enterica subsp. enterica serovar Hillegersberg strain FC2223 SAL_OC0837AA_AS_NODE_93_length_12107_cov_2.074541, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6402 29 100.0 32 ............................. CGCCTCGCTAACTCAATGGGGGGGCTGGTGGG 6463 29 100.0 32 ............................. GTGAAGCCCTGCAGTACCAATATTTTACCGAC 6524 29 100.0 32 ............................. CTGCTCACAACGTCATAATTGAAATAAACCCG 6585 29 100.0 32 ............................. GGGTCAAACATGGGATTACTGGGCGGGGGCGG 6646 29 100.0 32 ............................. CATTTTCCTCTCTCCTCGCTCCCATTGCGACC 6707 29 100.0 32 ............................. GTGAGGCAGTTGGTAGGAATGGCGTACCGCGC 6768 29 100.0 32 ............................. GGTATTTCTCGCGTCACGCTGTGGAGAATGTA 6829 29 100.0 32 ............................. CTGCCGATTGGTACGCGCTGTGCTGTCGTATA 6890 29 100.0 32 ............................. GTTGCCGGATCGTTGTCGGCAAAAAGGCCAAA 6951 29 100.0 32 ............................. AGGTTTTGAGGGCGTACAGCACATCTGAATTA 7012 29 100.0 32 ............................. CCGACGTGGGGATTTACCGCCACGCATAAAAA 7073 29 100.0 32 ............................. GGAGAGCGTATGACCACTAATAACAAACTAAC 7134 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 7195 29 100.0 32 ............................. GAGCTAAATACTATTACGACAATGAAATGAGT 7256 29 100.0 32 ............................. GGCACAAACCGTACTTTGGCGCATCCATGACG 7317 29 100.0 32 ............................. AGATGCCCAGTCCTATTATCGGTATGAGCGAC 7378 29 100.0 32 ............................. GTTTCCGGGTTTAAAGGCACCCGGATGGATTG 7439 29 100.0 32 ............................. GGGTTGAAAATTATCCAGTCCTGAGCGTTAAC 7500 29 96.6 32 ............................C TCACTAACGTACATATCGATCATGCGCCGGAC 7561 29 100.0 32 ............................. GTATGGCCTCGACCCGTTTCGCGTTCATGAAA 7622 29 100.0 32 ............................. CTCCTCTTTCCACACATCGCGATAGTCGAATC 7683 29 100.0 32 ............................. AACCAGAACTTCACAACAGCGTATTTTTATAA 7744 29 100.0 32 ............................. CTGGCGGCATTAAAACAAAATATAGTCGATCG 7805 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCATGGAGGACGATATCGCTGAACAGATTGCCGTCGCTGTGGCTAATCGCATGATGCAGGCATGGGGCGGCCAAACCATCTACCTGCCCAAAGGTATGATCTTCATGACATCGGCGCGGGACTATAAAATCTGGCAGGAGTGTGATGGACGCAACTACCGCGAACTGGCGAAGAAGTACAACCTAACCTTGCAGTGGATCTACAAAGTGGTGAAAAAGATCCAGCGTTCTGAAAGCGCCCGCCGACAACTCCCATTATTCTCTATCACTGATGAATCTGAAGCAGTAAAATCAACCCTGAAGTGATTGATGAAACGAGGTCGTAATGACGTTGGCCTCGTTTCAGTATCTGAAAAGTAATTACAGAAACCATCCCGTTAAAACTCACCTTACCCCACTTAATCCCAGAATTATCGTGCAGATGGTGATGGGTTTATCTCACTTCTGATTACCAGCGGGGATAAACCGCCGCCCCGGCAGTCATGGGTTGTTATTTCTGG # Right flank : GGAATGACCGCTGGTTTTTCTCTAATTATGGCTATATCACTAAAGCGGCAGCGACTGCTGAGAGATTGAGATTAATTAACCCGAAGTTCTATAATCTATTGTACATGAACCATCTGGAAATATTTTTCTTTCTTTTTGATGGCTATCATTCCAAATGATATATATTTGGGTGACTATGCATTTACTACCGAAGATGAGGCAATGAGGTTTTTAAAGAGGTTAATTCAATGAGTGATTTTCTTAAATGGATAGTCAGGACCTTATTAAAGGACATCATCGGTTTTATGCTACCGACCGTGATTGTCATCGGTGTTATGATTATCGTGGTAGTGAATTTTTCTGAATATTCAGGAATGTTATTTTTCCCTATAGTTGTTATTGCCATCTATCTTACGGGGAAATTAATTAAATAGTTTTCAATGAAAAGTTGTGTTATTCAATTAACATTTGAAATACTTATTATTAACTCTATTCCTGATCCGACAACAATCACTGGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37473-39942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFW010000044.1 Salmonella enterica subsp. enterica serovar Hillegersberg strain FC2223 SAL_OC0837AA_AS_NODE_13_length_79071_cov_2.281427, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 37473 29 100.0 32 ............................. CAGCCGTAGAGATAGAGAATATAAACGACTCA 37534 29 100.0 32 ............................. ACAATTTCCCGATAGGCGACGATTTCCAGTAA 37595 29 100.0 32 ............................. GCTATACGGTGGTTATCACTGAGCCGAAACCA 37656 29 100.0 32 ............................. AGAGCTGTGGCACTGTTTTACGGGTTGCCGAC 37717 29 100.0 32 ............................. CGGCCCCTTACCGATACCCAGTCGTACTCCCC 37778 29 100.0 32 ............................. GCTAAACGTGTTCCTGACGACCTGGCGAGAAT 37839 29 100.0 32 ............................. GACAAGGGCGAGGCCTGCGAGGGAAAACGGAG 37900 29 100.0 32 ............................. CCTCGTTCCCGGTGGTGGTGTTCGATCCGCCA 37961 29 100.0 32 ............................. GCACGTAAAAATATTGGTATTGATGGTGACAT 38022 29 100.0 32 ............................. TTCGTGTGCCTCAGGCTGGCTACTTAGCACCT 38083 29 100.0 32 ............................. ATGCGCGCCGAGGATTACGGCGATCGCCTGAT 38144 29 100.0 32 ............................. GGGATAAATCGGCGCGACCATTCCAGCGGTAA 38205 29 100.0 32 ............................. GAGATGGGAGAGAACGCCACCGAGGCAGATTA 38266 29 100.0 32 ............................. GTAAATGGACGCCTTCGATTCATATGCCACGC 38327 29 100.0 32 ............................. CTCTGAGGGTATATCCCACCTTGAGGGATACC 38388 29 100.0 32 ............................. GAACGAAACGGACTGGGCTGCCGATCGGCTGG 38449 29 100.0 32 ............................. TATACGCGTCAGATATTCCCTGTTTTGTATCC 38510 29 96.6 32 ............T................ CGTTCTATGCTGCCGATGACGTCCCGGAACGA 38571 29 96.6 32 ............T................ AGCGCCTTGGATACTTCGACTATACGTTTGAT 38632 29 96.6 32 ............T................ GCTGCTGCTCAATCCGTCTGGGAAAAATACGA 38693 29 96.6 32 ............T................ CGCGCGGCGGCGCTTATCCGTCAGCTCTTTGA 38754 29 96.6 32 ............T................ CTCCGTAACTTATCGCCGTGGATCACCAGATA 38815 29 96.6 32 ............T................ TTGAAACTGGCTGGACTTGCGCCAGTGTTACT 38876 29 96.6 32 ............T................ CCTCAGCACGTATCAGAACGAACTGGCGCTGC 38937 29 96.6 32 ............T................ TTTATTTCACCTATAATCGCCCGGCTTGCGCA 38998 29 96.6 32 ............T................ AGTCTGCTGCCCCCTCCTGATTTCGTTAAAAC 39059 29 96.6 32 ............T................ CTTCGAGTGATAATTCAGATACTGTTTTTTGG 39120 29 96.6 32 ............T................ GCGGCACGGTGTGTTATATCTGGAGCGAGATA 39181 29 96.6 32 ............T................ GTTGGTGCCGTTTGAAACTTCGACTCCCTGAG 39242 29 96.6 32 ............T................ CGCGTCCTCTTTTAGATTCTCCGTTGTTCCGT 39303 29 96.6 32 ............T................ AGCAGATCAACAAATGGATTGAGGACTACGGT 39364 29 96.6 32 ............T................ TGTTGAAAAACACATTCCCCTGCGCTAACGAG 39425 29 93.1 32 ............T...............A AAAATAAAATTTCCATAGTGATTAATTATTAT 39486 29 96.6 32 ............T................ TAGAAGATTATGACAAATTGTCGATTTTCCAA 39547 29 96.6 32 ............T................ GATAAACCGGCCGGGGCAATCTCCCAGAGTGC 39608 29 96.6 32 ............T................ GTCAACGAGGGTTTAAATTGGTGGTGTATTGG 39669 29 93.1 33 ............T.......A........ TGCCTGTCAGCCTGGCTCATTTGCGCTCCCTGC 39731 29 96.6 32 ............T................ AATCAGCAAGAAATTTCCCAATATCGATTTCA 39792 29 100.0 32 ............................. GTTTTTTGCGTGGCAAGTGTTTGCCGGGCGAT 39853 29 100.0 32 ............................. GATTCATCAAGCGCGACAACGCTCGTTTTATC 39914 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATGAAATCAAGCATCCTGTTGGGCGAGTGCGTGATATTGAGGCACTGGATGAATTGTTAGCCACGTTGAGTGATGATAAACCACGCGTAATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGTATTAATCTTACGGACGGCCTGTCGTTGCCGTCAATGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGAGGAGTGTATAAAAGCACGGATAAATTTTTCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGGAAAAATCATTCTATGAAATTTTTTGTAGCAAAATCAGGAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAATTCATAAACAATGATATACATTTAGT # Right flank : GCTATATCCACAAGGGCTGGATTTTCTTTATTTCCTTATCGAGCCGATTGCAGAACCGTTTGTTGAAGGATTAACCATACTTGAAAAATCAGGGCCAGCTGATTTCTCATATTTGCTGGAGATGATAGATCATGAAATGCAACAGGCAAACAGCTAAGAAAATAGCATGTAAGATTTATTATGAGCTTTTCGGCTATATAGAAGAATTGCTCTATACGCTGAGCGTATTGATATGCCTTTTCTCCTTGTTTATTTTCGACACATGGACAGGGCGAGTCTTATGTATTGTTTTATCAATCGGAGCAACATATTTACTGACAAAGATCTTGCCCAAGGATGAATAACAACATGGAAAAACGTTTTCAACCCCATCAACATTCTGGATACGTTTTGTAAACAGTACCGCTCAGTCATGGGCAGAATTGAACTGGCCCGCCCAATGAGGGGGACGCATTTTCCGAACTGGCCCTCCTGGTGTTTTCTGCCCTTAGTCATCTGGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50186-50822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFW010000044.1 Salmonella enterica subsp. enterica serovar Hillegersberg strain FC2223 SAL_OC0837AA_AS_NODE_13_length_79071_cov_2.281427, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50186 29 100.0 32 ............................. GTGTCCGGTGAACTGGCGAACGTCGGCGACGA 50247 29 100.0 32 ............................. CCAACACGTATACAGATAACTCATCTAAACAA 50308 29 100.0 32 ............................. CGCACGATTAAATACCCGATAATCAATTTGAT 50369 29 100.0 32 ............................. CCATCGAAAACGACGTTTATAGCAGCATGGGT 50430 29 100.0 32 ............................. GCCACGCGGCGTGGTTTTAACTGGCTGCGGGG 50491 29 96.6 32 ............................T GGATCGCGTTCGCTACTACCGTGAGCAAAGTC 50552 29 100.0 30 ............................. GAAAAAACAATACAAAAAGGGCCACTTTGC 50611 29 100.0 32 ............................. CCTCTTGAGGTTCATCCCCGCTAACGCAGGGA 50672 29 100.0 32 ............................. GACGCGATGGGGAATATCGTTAAAGTGGTTTA 50733 29 100.0 32 ............................. CCCCGCCATTTTTCCGACGTTATCCCACGCGG 50794 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAATACCTGGCTGGCGCTGTATCAGCCGGACTCCCGTCCCAGCCTGATTCTGGCGCATAGCGCGCGTCGCTTAATGGATCGTTTCAATCAGTCAATATGGTCGGTCACTCTTTCCGGTACGGAAGAACCCGATGAAGCGCAGCCTGATAGTCAGGGATGCGCCGCCTGGTTTTCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGCGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTATTGGGTCTTAGCAACAAGATTTTACTGGCTGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATT # Right flank : GAAACAGCCGCGCACCCAAAAACAGCCGCGCGAGTGTTCCCCGCGCCAGCGTAAAGCCGCGCGCGATAAATCGGCGCTAAAAACGCGATAAATAACAGGCGGCTTTCATTTCAGTATGAGTAACAGATTTTCACTTATTTGGGGTACGCCTGAACTCTGAACAGCTTGCTGTTCAGCTGTTGACGCGCACGTTTATCCAGGAATCGGATATAACGGAACTGTTTAAAACGATGTCTCGTTGCTTTATCCAGATTTGCTCGAAGGTACTCTCCGCGTTTGCCACCACGAACCAGCGCCGTTCTACATATCTCATGGTAAAACTCACCATCCAATTCATAAAACGTAGAGAAATGGCTACCGATGTAGTCAAAGTTTGCAGCCTGATACACTACGCCTGAACGGCCACAACGCTCATCTGCAAATGTTTGAACCCATTTAACTTGTGGATAAAGAATGGAGATAAGCTTTAGTGAGTAAGCTAAGACACGACTTTCAGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //