Array 1 3907-2498 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAL01000313.1 Pseudomonas aeruginosa strain VET-28 PA2_G12_NODE_315_length_4037_cov_36.1591_ID_629, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3906 28 100.0 32 ............................ AGTCGGGCTGTTGAGTCTTTCCGCTAAAGCAT 3846 28 100.0 32 ............................ AAGAGAACGACTGCTGAATCAGCATGGTCATG 3786 28 100.0 32 ............................ CTGGCCAATGTCGATGCCCTCGCAGTGCAGGT 3726 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 3666 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 3606 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 3546 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 3486 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 3426 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 3366 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 3306 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 3246 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 3185 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 3125 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 3065 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 3005 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 2945 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 2885 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 2825 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 2765 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 2705 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 2645 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 2585 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 2525 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38210-39077 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAAL01000225.1 Pseudomonas aeruginosa strain VET-28 PA2_G12_NODE_41_length_40133_cov_26.7768_ID_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38210 28 100.0 32 ............................ ATGTAGCCGAGTGCGCTGCGACCGGCTTCGTA 38270 28 100.0 32 ............................ TGGCGACGTCCACTCGATGCTGCTGATGATTC 38330 28 100.0 32 ............................ ACGACCGCAAGACGCGGACCGATGGGGGTGCA 38390 28 100.0 32 ............................ AGCTTCCGGGCCGATGTTGCCGACCGTGGTAT 38450 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 38510 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 38570 28 100.0 32 ............................ CAGCGCAACAGGCGCATAAGTTCGTTGTAGTG 38630 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 38690 28 100.0 32 ............................ AAGCTCGCGCGGGCCTACGAGCAACACGCCAA 38750 28 100.0 32 ............................ GTAGTGCCGCCAGCACAGCGCCTCGACGGTGT 38810 28 100.0 32 ............................ AAAGAGGCTGCGCAGCACCGACGCACCTTCGT 38870 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 38930 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 38990 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39050 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //