Array 1 92656-96829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000001.1 Megamonas hypermegale strain An400 An400_contig-110_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 92656 30 100.0 35 .............................. TTTTAAAAACCCCTTTTTCTGTTTTTCTTCTAGCT 92721 30 100.0 36 .............................. TTATTAATACTTACTTTTCTTGCCTTTGTTTCCATA 92787 30 100.0 36 .............................. TGTCGGTAGTGGTATTGGCGCAAAAATTGATGAAGG 92853 30 100.0 36 .............................. AAGGCAGCCAGCAGTTACCCATGAGCAACAACAAAA 92919 30 90.0 36 TGA........................... AAGCAGGGACGGACGAGGACGCATTACAACAAAATA 92985 30 100.0 35 .............................. GCAATAGTTGTAGCAAATGCAATTCTTTCCATTGT 93050 30 100.0 36 .............................. ATATTGCTGCTTTTAGTATTACTATTGTTTGTTGCA 93116 30 100.0 35 .............................. GCCCGTAAATAATAACGGATATTATGGTAATCCAA 93181 30 100.0 36 .............................. TAGTGATGAGGCTTGCTGAAAAGGGCTGATACCTAA 93247 30 100.0 36 .............................. TTTAGCCATTGCACTGGGTTGCTATGCAATGGCTTC 93313 30 100.0 36 .............................. CAAACAGGCGTTTTTGAAGCTCTAGCATACAATGCA 93379 30 100.0 36 .............................. AGTTGTTGCTGAAGCATAGTTTGATTAGCAAGCTGA 93445 30 100.0 36 .............................. AGTCCATTTATTGCATCCTCCCTATTGTTAAATACT 93511 30 100.0 35 .............................. TTGTTCAAGCGACCACTTTTCCCACTCGTCTGGTA 93576 30 100.0 36 .............................. CCAACAAAATCACGCCCCAACAAACCCAATAAAGAA 93642 30 100.0 37 .............................. CAGAAGCTAAGGCTAAAAAAGAAGCAGCAGAAATGCT 93709 30 100.0 35 .............................. TCATGGTCCTTTCGTTACAAATATGTCATTAAAAT 93774 30 100.0 36 .............................. TTTAAGGTTGTAGTTACAGCTTGGCCAAACGGCCCT 93840 30 100.0 34 .............................. TGCCATGATGTTCCGTCTCCATTTCTCTTCATGC 93904 30 100.0 34 .............................. GGGTCTTCCGTTCTTAATTGCGATAATATACTCA 93968 30 100.0 36 .............................. AATTTAACCATGTATAAAAACATAATCATCACTCCT 94034 30 100.0 36 .............................. TGATAAATCGCTCCTTATTTTGTAATTTCTGCTTTA 94100 30 100.0 37 .............................. TTCAAAAGCATACATTCTAAAAGCAATGTTATATTTT 94167 30 100.0 35 .............................. CCAAAACTATAAATTCCATTTATAAGGCTATTTTT 94232 30 100.0 36 .............................. TATTGTCTGTTGCTTTTTCTACTTTGAAATAACCAT 94298 30 100.0 36 .............................. TTATTTTTTTCGCAGTTTTTATTCAAATCTATAAAA 94364 30 100.0 36 .............................. AGCCCAGCGGTAAAATAAATTGGGATTGGGTGCGGG 94430 30 100.0 35 .............................. AAATGCTCCCTTTATCAGAGCCACTGCCTTGAATT 94495 30 100.0 36 .............................. CTTTGCCACCTTCTTCCCACCATTTCCATTTAACAA 94561 30 100.0 36 .............................. TAGACAGAACAGGACAAAAATTTAATCACCTCACTA 94627 30 100.0 36 .............................. ACCTTCATTAATTCATATTTTCCGACTAATTCTTTA 94693 30 100.0 36 .............................. AAAATTTAATCACCTAACCATTATAAAGGAAAACGG 94759 30 100.0 35 .............................. CTGGAATGTCCTAGACGTTCTTGAATTGCCTCTAG 94824 30 100.0 36 .............................. AACAATACCGACATTCTTTTATGATATGAGCCTTTC 94890 30 100.0 36 .............................. TATTGCTTCCAACGACTATTGCGCCAGCTAATAAGA 94956 30 100.0 36 .............................. CAACTTAATTATAACACAGAATAGAGGTTTTTTTAT 95022 30 100.0 34 .............................. CGCGAATTTTCCGAAACTTTGAGGTGGTACGGAC 95086 30 100.0 36 .............................. GTTGTAATTGTAATGTGTTGTTCTGCGTCTGTAGCT 95152 30 100.0 36 .............................. TACTAGAGATAAAGTAGGCGTTAATATCGACCGCAT 95218 30 100.0 37 .............................. TTTTATTTGTTTTAGCTTTTAATTTAGCTATTAAAAT 95285 30 100.0 36 .............................. TATAACAAAAAGGGTAAATTTATAAAAGTAATAAGG 95351 30 100.0 35 .............................. TGGCAACGCGCATTAATTCCTGTGCCCAAACTTTT 95416 30 100.0 37 .............................. TCCCCGTCTGCTCCTTCATCGAATTTATATCCAACCT 95483 30 100.0 37 .............................. AAATTAAATTCAAATCTAATTTTTATATCTTTATCAC 95550 30 100.0 36 .............................. CCCAATGGTATATCTTAGATTGGCGTATATTGGGAT 95616 30 100.0 36 .............................. AGCAAGATTTCAAAGAAGATGGCAGAATAATATATA 95682 30 100.0 36 .............................. AAAGTTGCAGGACGAGTATGCAGGTGATAAATATTA 95748 30 100.0 35 .............................. GATTGTCGATGATTTAGATGAGTAACATACAAAAG 95813 30 100.0 36 .............................. TAATGCATATTTTTCCTGGTTTCTTTTAAATACGGC 95879 30 100.0 36 .............................. TGTCTTTTGCTGGAGCTACAAAATCGTCAAATTCAA 95945 30 100.0 36 .............................. TCTAGCTTGAACGGTTCATCGCCGATTTCTCGACGG 96011 30 100.0 36 .............................. AAACTATCAGCTGTAGTATTTTTTGTTTGATAATAT 96077 30 100.0 36 .............................. ATGATAGAGAATGGTAAAAATCCTTTATCAAAAAGA 96143 30 100.0 36 .............................. TTTTTCTTATTTATTTAAGTATGCCAAAGAAATTAA 96209 30 100.0 36 .............................. CTAATGTTAATCTATCACCTCTAAATACATAGTTAG 96275 30 100.0 37 .............................. ATAATTTATCTTCTGTTATTTTGATGGCATAAGGGAG 96342 30 100.0 37 .............................. TCTGTTTCTCCATCACCTTTAGCACCAAACTGCTTTA 96409 30 100.0 36 .............................. AAAAATAGAATTAAGTAAGGAGGAGCAACAAATTAT 96475 30 100.0 36 .............................. ATAGTTTGTAAATAATGTATTGTATCAATATACAAA 96541 30 96.7 36 ................T............. AGGAACACCATAAGAAATTGGGAACTTGGAATAAGA 96607 30 90.0 37 A.....T.........T............. TGTTAATATTTGATATGTTAATGACTGATGAAAATTA 96674 30 93.3 39 ......T...................A... CTCCAACGAACCTGATAAGTATTTTTACTGCCTAGTTGC 96743 29 90.0 28 ......T.....T...-............. AAAAAATAAACTGGTATTATTTATACCA Deletion [96800] 96800 30 76.7 0 .C....A.T...T...TA........A... | ========== ====== ====== ====== ============================== ======================================= ================== 64 30 99.0 36 GATTAACAGTAACAAACGTTGTTTTTGAAT # Left flank : CCATATTCATTGAAAGCAGGATATTGATAGATGCGCAAAAAAATAAATTATAATTATGCTTTTGTGTTTTACGATGTAAATGAGAAGCGAGTGCAAAAGGTATTTAAGATATGTAAAAAATATTTATCACATTTTCAAAACTCGGTATTTAGAGGAGAAATAACACCATCAAAATTAATGAAATTAAAATTGGAACTACAAAAAGTTATAGTAGATGAAGAAGATTTTGTTTGCATAATAAAGTTAATGAATGATGATGTATTTGGTGAAGAATTTATAGGTAAAAAAGATGTAGAAAGTGGAGAAAGTTTGTTTTTATAGACTAAATTTTACCAGGCATAAAAATAAGCATATGCTGATAAACCCTTATAAATAAAAGCGTTATGGCTCATTTCTTTCATTGGAAAGATAAACACACTATGCCTGGTAAATTTTACTTAGAATGTTGAAATATCAAGATTTTTGAGCTATATTATAAAATGTAAAGTCTTTAAAAACGA # Right flank : TGAAGTTTTATATTAATTTTTGCTTATATCTATCCATTCGATAGCTTTGGAGTATTTTTCAAGCTCTGGAATAGTTAATTTTATGGCACTGTTTCGGCTACCACAGGCTGGATAAACGGTATCAAATCGTTTTAGGGATATATCAAGATATACTTTTACGCCATCTTTTGGTGCAAATGGACAAACGCCACCGATTGGGAAACCGGTATAGGTTTCTACCTCATCACCTTTTAACATCGTAGATTTTTTGTGAAATTTTTCTTTAAATTTATGATTATCTATTCGTACATCACCAGCCATTACCACTAAAATTGCAGTATCGTTTAATTTGAATGACATTGTTTTAGCGATACGTGCTTCTTCGCAATTTAATGTTTGAGCAGCTTCAGAAACAGTTGCGCTAGAAGTTGGAAATTCCATGACTTTATCTTCCATATTAAATTGTTTAAAATATGCTTTTACCTTATCAATTGACAAAATAATCATTCCTTTATTGTGTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAACGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 180-872 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000052.1 Megamonas hypermegale strain An400 An400_contig-110_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 180 35 97.1 36 ...........A....................... TAGAGCTGAATTTAATTGGAAACTCAAATCTGTATG 251 35 97.1 39 ...........A....................... TCCTGTGAAGACTCCTAGTTTTTTAACGTCATTGAATAA 325 35 97.1 39 ...........A....................... TGGCTTTTAAATTAAAGGTATCTCCCGGAAGGACTTCAT 399 35 97.1 38 ...........A....................... TATAAATCTTTTTTAGAAAGAGCTAAAAAAGAAAAAGA 472 35 100.0 37 ................................... GATAGTATCAGTCTTAAAGAAGTTGAAGTTACTTTCA 544 35 97.1 39 .......................A........... GAGCTGATAAAGAAAAGATTACTATATCTAAGAAGTATA 618 35 100.0 36 ................................... TAGTAATCTACCTCGTCTGTAGCTTGTCCCCAAGCT 689 35 100.0 39 ................................... TCTTTAGTAGAAGGTAATTGAAATCTTTCATTTTCCTGA 763 35 100.0 40 ................................... CTTCGTTAAACAACAAAAGTTCGATAGATTTGCAAAACCA 838 35 97.1 0 ................A.................. | ========== ====== ====== ====== =================================== ======================================== ================== 10 35 98.3 38 GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Left flank : CCAAAAAACAGCAAAAAATGCCCTAAAATGGCAAAAAAACGGCTTCTCAGCCGCACCGCGCCACTACTGGGCTCGCGGCACTTTTTGAAGTGTTTAACAGTGCTCAATCTACCTCAAACCTGTTCTCAGCCGCAAACTGCATTTTCAGCCCAATAACGACGCGGGTTTCAGGGCACAGGG # Right flank : CCTCTGATTTTTAAAAATAAATCATTTTTCGCAAAATAATTTAAAGCTAGCCTTATATAAATAAAGGCTATTTTAAGAGGTGATTTATAATGTTTATATTAGGATTTGCGCTATTTGTTATAGCTATTGAAATACTTTTTCCTGATATTGATGATGATGCGGTGTATTGATAAAAAATTAAAAGCAGTATTGTTGCTACAATATTAAATAACGAAATTTAATGAAGCTATAACAATTTGAGTATTAACTCTTTTTGTTATAGCTTTTCTTCATTTTAGGCATAAAAAAGCCCGATATCTAAGATATCGAGCTTCTGTTTTATCTCATTTATTTATCTGCTTTTAAAGAGAAATCAAACCAATCTTTTACTTTTACTTCTAAATCTTTAAAATTTCCATTATCAACTATATACTTCACTCCTTCATAAATAAAAAATCCAAAGCCTAAAACTACGACACTCGTTTCACTGTATTTTATAACATCTCCTATTAATTTATTAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Alternate repeat : GTTTGAAACTAACCCCGTATATAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.50,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1004-1258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000061.1 Megamonas hypermegale strain An400 An400_contig-110_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1004 35 100.0 40 ................................... TAATTTACACCTACTTATAAGTAAGTTCATATGCTATGCT 1079 35 100.0 37 ................................... AAAAAGTTGTACTATAGATGCTACTCATCATAGTGGT 1151 35 100.0 38 ................................... AAAATTCAGAATTTATTAAACGTGGTGTTATATGTAGA 1224 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 100.0 39 GTTTCCGTCCCCTATATACGGGGCTAGTTTCAAAC # Left flank : TATATTGCGATTATATCGCCTAAGTAAAACTAATTGATTATGTATTTTAGCTGAAACAATCTTTTGAGCTAATTTAAAATAGAAGTCTTTTTCCTCAATTAAATCAAATTGTTGTTTCTGTTTAAAAATATCAACGAAAGAAGGTGCTAATAAAGAGCCATACATTTTACCAGATGTTGACATCCAAGATACAGGAATATTTTTAGTAAGACATTCTGTTATGAGTGAAGATGATATTTGAGTTGTATTTGTAACAGTGATATTTTCTACTAATTCTAATGGAACTTCTGTGATAGTAGTTTCTTCTTTATCAATAAGCAGTTTTCCGCCACGTTTATGTAGGTAAGTGCCATTTTCTGTAATATAAATAGAAGCCATAACAAAAATCCTTTCTAATTTAATACTTGTATATATTATAGAAAGAAAATACTTATTAAGCAAATTTTATATAAATTGAAAAGAGATAGCCAATATAATTGTGTATTGACTATCTCTTTTTA # Right flank : CCTGTGCCCTGGAACCCGCGTCGTTATTGGGCTGAAAATGCAGTTTGCGGCTGAGAACAGGTTTGAGGTCGAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTATATACGGGGCTAGTTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 118-508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000066.1 Megamonas hypermegale strain An400 An400_contig-110_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 118 35 100.0 40 ................................... CTGTTTTTATCGAAATACCATAATTCTTGTCTTTTAATAC 193 35 100.0 34 ................................... CGAAGTCCCTAGTTAGAATCCCCAGGATTTATAA 262 35 100.0 34 ................................... TGAATAAGTTTTTCATAATAACAACTCCTTTTAT 331 35 100.0 36 ................................... GCGAATGCTTGAAGTTCGTCTCCAGACAAACCTCTA 402 35 100.0 38 ................................... TACAACTACTCTCAACCTAAATATCTTGCTTTACTACA 475 34 94.3 0 .............................-....T | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 99.0 37 GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Left flank : ACTACTGGGCTCGTGGCACTTTTTAAAGTGTTTAACAATGCTCAATCGACCTCAAACCTGTTCTCAGCCGCAAACTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGAGCACAGGG # Right flank : TTAGTAGAAAAGAGCAAAAGTATAATGCTTTTGCTCTTTTTCTTTCATTATGTCTAAAAAAAATGCTGAGATAAAAGACTTTTCTTCTACCTCAGCATTTTTATTTTTATCTATTTATTTTTCCTTACTTATTAATCATCAAAAATAGCATCCCACACTTCATCTACTACATATTCAATTATTGCATCTTCAATATCTTCATCAAACATAACTTATTCCTCCAAATTTTTAATCTATATATCCAAAACTTTAACGACTCATCGCCTTTTTATTTTTATATCTTCTATCATCTGCCTAAATATTTTCTCCTTTTTCAAACATTCTACTTTCATATATCACACCTACTTTCTTTTCATCTTTTATTTAAATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.50,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 764-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000068.1 Megamonas hypermegale strain An400 An400_contig-110_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 763 35 100.0 38 ................................... TATCATATTCTTTGCTTATTTCTTCTGCCTTTTTAAGA 690 35 100.0 37 ................................... GTACTCACTCCAGCAGTCCCCTGTGAAATTTTTTACA 618 35 100.0 34 ................................... ATAAACCTGAAGAAATACTAGTAGCTGAAAATAA 549 35 100.0 39 ................................... GCCATCTCTATGACCTATATGAGTGCGGCCGATAGTGTA 475 35 100.0 39 ................................... TGTCAAGAGCTACCATATTTTTGTAATTTTTGATATTAA 401 35 100.0 40 ................................... TCTACATCCTCTCTGTCTATAGGATCTAGATCATCAATCT 326 35 100.0 36 ................................... TACACCACCTAAAATTAAACTAAGACCAATGAATTT 255 35 97.1 37 .......................A........... TTTGATGAACGCACGGAGCTGTTTCCAGTTTCCACTA 183 35 100.0 39 ................................... TTTCTGCTTAACAAAGTTAAGCTTAAAGGTAAAACATAC 109 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 10 35 99.7 38 GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Left flank : ATCGACCTCAAACCTGTTCTCAGCCGCAAACTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGGGCACAG # Right flank : CCAATACAAAAGAGCAAAAGTATAACGCTTTTGCTCTTTTTCTTTTATTATTCTTTAAAAAAATGCTGAGATAAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 88561-88160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000009.1 Megamonas hypermegale strain An400 An400_contig-110_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 88560 35 100.0 38 ................................... TTTAAATATAAAATTAATATAATTTATTACCTTTTACA 88487 35 100.0 38 ................................... GCTAGAGCTCTTAATTCATTTACTGAAAGATTTGGATT 88414 35 100.0 37 ................................... AAATTTCTTTTGGTCATACCAGAACCATTTTTCAGTA 88342 35 100.0 38 ................................... TATTTTTAATTTTCATGATAAAAGACCTCCTTTTATTT 88269 35 100.0 40 ................................... TCTTCTGGCAAATCCATTAAAGCATCTTGCAATTTGTATA 88194 35 94.3 0 .................................TT | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 99.0 38 GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Left flank : CCAAAAAACAGCAAAAAATGCCCTAAAATGGCAAAAAAACGGCTTCTCAGCCGCACCGCGCCACTACTGGGCTCGCGGCACTTTTTGAAGTGTTTAACAGTGCTCAATCGACCTCAAACCTGTTCTCAGCCGCAAACTGCATTTTCAGCCCAATAACGACGCGGCTTCCAGGGCACAG # Right flank : TAATAAAGCTATAACAATTTGAGTATTAACTCTTTTTGTTATAGCTTTTCTTCATTTTAGGCATAAAAAAAGCCCGATATCTAAGATATCGAGCTTCTTTTCTATTTGTTTATCATTATTCTACTAAATCAGGGTTAAAGCTTTCTTTCCAAGGAAGTCCCCATTTATTAAGTGCATCCATAAATGGATCTGGATCGAATTCTTCTACATTGTATACGCCTGGTTTTCTCCATTGACCGTTCATGATGAGCATTGCACCAATCATTGCAGGTACGCCAGTCGTATAAGAAACTGCTTGTGAACCAACTTCTTTATAGCATTCTTGATGGTCGCAAACATTGTATAAATAATATACTTTGTCTTTGCCATCTTTTTTGCCTTGGAAAATACAGCCGATATTTGTCTTACCAACAGTACGAGGGCCAAGACTTGCTGGGTCAGGTAATACCGCTTTTAAAAATTGAAGTGGCACAATTTTATGACCTTCAAAATCAATAGGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 4770-7755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000015.1 Megamonas hypermegale strain An400 An400_contig-110_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4770 30 100.0 36 .............................. ATTGCTTCTTGTCCTACGAAACCACCAGCGGATTGC 4836 30 100.0 37 .............................. TTTCCATTGGTTAGAGTTTATATTAACATTTAATACA 4903 30 100.0 37 .............................. TAAACAAAAAAATAACATCCTTACCAGGTATTAATTT 4970 30 100.0 36 .............................. TTTATTTTTATTGCCATCCTTAAAATCGCTATTCTT 5036 30 100.0 37 .............................. CTATAGCCATTGAATCTGATACTAAAATAAGGCGTAC 5103 30 100.0 36 .............................. TATTGTTTGTTTACTTGTAGGTTATTAAAGTTATTA 5169 30 100.0 34 .............................. AAGGGGCTACCGTTTTGACGGCAGTGCTCACAAA 5233 30 100.0 36 .............................. GAATGAACCCCGGATTTTTAATTAACACTTTTCGAA 5299 30 100.0 36 .............................. CCGACCAGATTAATGACGTGCTATATGACCATAATA 5365 30 100.0 36 .............................. CTTAACGCATCGCCTTTAAACATCAAGTCGTTTAAT 5431 30 100.0 35 .............................. TATAGTAGATTTGCTAAAGGATTTCTTTTTAATAA 5496 30 100.0 36 .............................. TGGTTCTGGCTGGTTCGGTTATGGGCTTTATCATAA 5562 30 100.0 36 .............................. TTTGTGCTTTACGTTTAGCAATACCAATTATATCAG 5628 30 100.0 34 .............................. GGTTTGTGTTGTTGTTGTTGTTCCTTTTCCAGCT 5692 30 100.0 36 .............................. TGTACATGATTGAAAAAAGATGTATAAATCTTTGAA 5758 30 100.0 36 .............................. AATTTTAGCTGCTTGTCAAGGCTATGTGAATGAAAA 5824 30 100.0 36 .............................. CGCCGCAAATGGTAAAAGCAATGAACCAAATAAATA 5890 30 100.0 37 .............................. CTATGGTGCGCGCCCCGTTTTGGGGATTGCACCATAA 5957 30 100.0 35 .............................. TTGCCAGTTTCCAGTTTTTAGCGCGTTTGGCAATC 6022 30 100.0 35 .............................. CGATGAAAAAAATAGAAAAGCGAGTCGCGAACGGG 6087 30 100.0 35 .............................. TTGCCTTCCAGAAGCTGGGAAAACAACGGTAAAAG 6152 30 100.0 35 .............................. TTGTCTATAATATAACACAGCTTTTTTGCTGTGTC 6217 30 100.0 37 .............................. ATCTCTAAGCCACGCAGGATTATTTTTTGCCCAGTTG 6284 30 100.0 36 .............................. AGATATTGTTTGTGCTGCTGTTAGTAGCACTTGTTA 6350 30 100.0 36 .............................. TCATAGACAGCCAGCTTAGACAAAGGGACTAGCATC 6416 30 100.0 37 .............................. TCGGGCATTTGCATTAAGTCGTCATTTGTGAGCGTAA 6483 30 100.0 34 .............................. CTATGGTGCGCGCCCCGTTTGGGGGTTTACACCA 6547 30 100.0 36 .............................. CCATTTTATTTAAAAACCGAGAACATGAGCGCACAG 6613 30 100.0 35 .............................. TCCTGTGTAGCAAAACCAGCTTGCGATTGGTGAGA 6678 30 100.0 34 .............................. TTAGGAACAAAGCACGCATTTAAAAGTGTACTGC 6742 30 100.0 35 .............................. TAATGTTTAGGGTATCTATTGTATAATTAGTAGCT 6807 30 100.0 36 .............................. TTTAAACAAATTGCTGTTTCTCTGTCCTCTTTTCTA 6873 30 100.0 36 .............................. CTTCACCTAACGCAACAATTTCTTCTGTTTTGTTTG 6939 30 100.0 37 .............................. TATTGGCTGCATTGTCCGATGTTAACGCTTCCTTTAT 7006 30 100.0 36 .............................. CTGAAAGCACCATTATTATCCTCGAATTCATCATAG 7072 30 100.0 34 .............................. AACTCTATACCAAAATCATCACATAGCTCTTTTA 7136 30 100.0 35 .............................. CCTCAACAGCTTCAGCAAGTGGCGATGAACCTTGC 7201 30 100.0 36 .............................. TAAGCATTTGCCATAAAGCACAGCGAGAAGGGCATA 7267 30 100.0 35 .............................. ACGTTTTACTCAGAAAACAATTCTCATATGTCTTT 7332 30 100.0 36 .............................. TAAGCCATTTCATTTAATTTCTTTAAGTTGTAATAT 7398 30 100.0 36 .............................. AGCAGTTGGGAACAAGCTAGAGCAAAAATGATTGAA 7464 30 100.0 36 .............................. GCCTTCTCGTGGCTTTTGTGAAATAAGCACTACCAA 7530 30 100.0 35 .............................. TAAATTGATAATTGAATATGCAAATACCAGATTAG 7595 30 100.0 35 .............................. TTAGTAAAAAAATATGTATATATTGTTATTGTTAA 7660 30 100.0 36 .............................. TTTTTACGTTGCCGGAACCCTCGCACCCTGTAACTT 7726 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 46 30 100.0 36 GTTTAACATTAACAAAAGTTGTATTTGAAT # Left flank : ACAAACTTATTAAACAATAATTTTTCTGCTGATGAATTACAACAATTATCCCGCGATATACAAACTGATTACATCATCATTTTTAACGGTGGTAAAATCAATTTTTATAATGCACAAGGTGAAGAAATTTCCGCTGATACAGATATGAATAAAATCGCTTTATACCATCAAACTAAAGATGTAAATATCGATATCACCCGCGAAATCGAAGTTCGCTTCACTGATTCTTATATCAATCGTATTATGACTAGCAATAATATATTTCAATCTTATATAGCTTGAAAACGATAAACTAAAAGAGCCTTTAAAGGCTCTTTTTTTGTGCATTTTACCAGCCACAAAATAAACCCCTTATCCTAAAACCCTTTAAATATAAACGTTTATCACTCCTTTTTAATAAATATAAAAAGATAACCAACCACTTGGTAAAAATAGATAAAAACATTGATAAATAAGGCTTTTTAAGCTATACTAAAAAAAAGAAACCCAATATTTACATG # Right flank : TGACATCAATGCGAATATATTGTTTGGGGTACCAAGGGTCAATGTAAAAAAGCTGTTCATGCAGGTCCGTATCCGGGCTGTTTAAAATTCCCGGTGCTTCAAAAAGACAAATTTCACCTTACCGGCAAGCCAACAGCATTAATGGAAGAACTCGTTAAAATCGTGCCGGAAGAAAGTATTATCTTAGACCCGTTTATCGGCAGCGGCACGACTGCGGTAGCTGCCAGAAAGCAGAATCGCAATTTTATAGGCATAGAGAAATCAAAAACTTATTATCAAATTGCACTGGAAAGATTAAAATAAGAAATTTATGTATAGAGCTGTATCACAAAAGATACAGCTCATTTTTTATTAAAAAATAAAAGAAAATAAAAATAATTCTGTAAAATATATTGATAAATACCCTTAAATCGTATACAATATAATTGTAAGGAGGTGAGAATATGATGGATGGTTTTAAAGATTTTCTTGAAACATCAACTTATCTTATAGTAATCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACATTAACAAAAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 30040-35866 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000008.1 Megamonas hypermegale strain An400 An400_contig-110_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 30040 30 100.0 35 .............................. GCTAGAAAATTAATTAATAAACTATGGTGAATTAT 30105 30 100.0 37 .............................. GCAGTGCCGTTCCATCCGCCACCGCCCCAGCCAAATC 30172 30 100.0 36 .............................. CATGTAGATTGATGGTAAGCCCATACACGAATTTTA 30238 30 100.0 36 .............................. CTCTGTCCGCCAGCGTCTAATACAATAGGATTATCA 30304 30 100.0 35 .............................. CCGTTAGTTAAAGTTACATCAAATGGTGCTGCCTC 30369 30 100.0 36 .............................. CGTACAGTAGCACCTAATTCTAATACATACAATACT 30435 30 100.0 36 .............................. AGAGACATCTGTTCCTATAAGCTACACTGATTTTAA 30501 30 100.0 36 .............................. CCGGGGGATATTGACTGGACAGACTTTAATCAAAAT 30567 30 100.0 36 .............................. TCATCAAAAATTGATTTGCCGCCTAGCTCAGTTAAT 30633 30 100.0 36 .............................. TCCCGAATAAATTTTGATTGCTGTAGAGTGCTTTTA 30699 30 100.0 36 .............................. GGCCGTCTCTGAGCGTCTTTTTTATCGTCTATGTGT 30765 30 100.0 36 .............................. CAATTTTTATCACCTTTGTATTTCCAATCGCAAGGA 30831 30 100.0 37 .............................. AGGTATTGGCAGCAGTAATAACGGGTAGGCATCCCCG 30898 30 100.0 36 .............................. ATACCAAAATCGATTGCCAAAACTATCTTTGCTAAA 30964 30 100.0 37 .............................. TCTACAATTTGAACGACCATTTGCTGTGCTCCTTCCA 31031 30 100.0 35 .............................. TATTTACCATGCCCATGATATGACCGCCAACTTTA 31096 30 100.0 36 .............................. ATTAATGTTAATATAAAGGAGGTGAGTTAATGGAAA 31162 30 100.0 36 .............................. GAAGTAGTTTCTTTTTTAGCTCCTATTTCTTTTTTC 31228 30 100.0 36 .............................. TGCAACAAACAATAGTAATACTAAAAGCAGCAATAT 31294 30 100.0 37 .............................. ATAATCTATATACATTTATTACAGACTGTGCATTTAA 31361 30 100.0 36 .............................. CCGTTTTCTTTTGTAAATGCTTCCTGGAGGGTGAAG 31427 30 100.0 36 .............................. AACGTTAAACATCCTATGACGGTCTTAGACGAATTA 31493 30 100.0 36 .............................. CCAAAATAAATAGCAACGGTGAAAAAAAGTATATGG 31559 30 100.0 36 .............................. ATCTGGTCTTGACTAGCGTTCCATGGCAATACGCCC 31625 30 100.0 36 .............................. TGGTGATTGGGGTATTGCTGGCGGACAGTTCTTTAA 31691 30 100.0 36 .............................. TTAATACATACCGTCCGATACATTTGTACTAACTAA 31757 30 100.0 34 .............................. TGTTTCCCGTTGTTCCATTTGTATTAAGTTGTCC 31821 30 100.0 37 .............................. CCCACACTACACTACGTGTTAAGGTTTATCGTATTAC 31888 30 100.0 36 .............................. ATAAATGGAATACTAGGTTTGTAGACGGTAATAAAC 31954 30 100.0 35 .............................. GCATTGCAGGAAGAAGAAAAGGATTTGATGACACA 32019 30 100.0 35 .............................. AGATATAATAAACAAGTTGCCGAAGCCGTATTCTA 32084 30 100.0 35 .............................. TCTGTATATCCATTTCTACGCGATTTTAGCTTAAA 32149 30 100.0 34 .............................. AAATTATATCTAGCGTTATTGACTAACGCTGACA 32213 30 100.0 35 .............................. ATATTATAGCTATATAGAAGCAGGTGAAAGACTAA 32278 30 100.0 36 .............................. AGCGCTAATTAAACAAGCCATAAACGGCACGCCTTG 32344 30 100.0 35 .............................. CATATTGAAGATATTAAATATTGGAAAGATAAAGC 32409 30 100.0 35 .............................. GTTTAAAAATTTATTTAAATAAGCAGGAGGGAAAA 32474 30 100.0 36 .............................. TTGTCATACGTTCGGAAACAAGACCATTAAAATAAT 32540 30 100.0 35 .............................. ATTTTTATTTCAACCTCCGTCAAATATCCTTTTCC 32605 30 100.0 37 .............................. CGTTCTCCGCGTATGCAACGCACGTCCTTTTTGCCTG 32672 30 100.0 36 .............................. TTAATCTGGTCGGCGATAGATATTGATGTATCATTT 32738 30 100.0 36 .............................. TCGTGTGCTTCTAAAAATTCCTTATATTCTTCTTCA 32804 30 100.0 36 .............................. TTTTCTGCTACACCGCCTTTGGGCTGTTGATTATTG 32870 30 100.0 36 .............................. TTATTATTTCCCATGCCCATTTTTTATCGGCTAATT 32936 30 100.0 35 .............................. ATTTTTCTGCCCACCTTATTTTGTTGGTCTGTTTT 33001 30 100.0 35 .............................. TTTATTACGCTACATTCGGTCTTATTTTCCTTTAC 33066 30 100.0 36 .............................. TGGTGCAGGTGCAACTATTGGCTTTTTGTTAGCCTG 33132 30 100.0 36 .............................. AATTCTTGATTATATCTTCCTCTTATTGGTGTTTCT 33198 30 100.0 35 .............................. TTTACATTCACAAGCGTTATAGATTGTAGATTTAA 33263 30 100.0 36 .............................. TTGAGATATACAGATTTAGCAAAGTCTACATAAACT 33329 30 100.0 35 .............................. ATGATATTCATAATGTCTAATTGTTTTTGCATATC 33394 30 100.0 35 .............................. CCTTCTAGTCTTTTTGCATATTGATGTGCCAACCA 33459 30 100.0 37 .............................. GTTTATACCTCGTTTAAATCAACTAAGGGGTTTCCGA 33526 30 100.0 34 .............................. CTTTTTTAAAGAGGCAAAGAAAAAAGATGTGGGG 33590 30 100.0 37 .............................. CCAAATCTTATAATAACACAAAATCGCTTCACTATGG 33657 30 100.0 35 .............................. GTTTTTTGATGTGAGCGCAACTTTTCTACTATACT 33722 30 100.0 36 .............................. ATAGCTATTTGCCATATAGCTTTTAAATACTGTTCT 33788 30 100.0 36 .............................. TACAATTTATTACTATAGCTGCTAAGAACTACATAT 33854 30 100.0 35 .............................. TTAAGCGCGATGAATAAATACAGCGAACGAGAAAT 33919 30 100.0 36 .............................. GGGCGTTTATTCCAAAAAAGAAGCAGCACAGAAAAG 33985 30 100.0 35 .............................. AGCAGAAAAAGAATTTGTTGATAGAATGGATAGTA 34050 30 100.0 36 .............................. AGAAATCTAACCATTAAAGCCATAGCCTGAATAGCT 34116 30 100.0 36 .............................. TTACTTACCTACAAATGCAAGCCTAGTTGCTAACTT 34182 30 100.0 36 .............................. GTTTCTTAAAGACAATGATTTCATGACAACAAGTGA 34248 30 100.0 36 .............................. TTAGTTCAAGCTATTCAAGACTCGGCAAACGACATG 34314 30 100.0 36 .............................. TTGATTTGTCGGATGTTCCAGGAAAAGAAGAAATCA 34380 30 100.0 36 .............................. TGTTGCAGGTGTCCCAATACCTTTTACTTCTTTTAA 34446 30 100.0 36 .............................. ATGTAGCTACAGGACAGCAAAAAGGTATAAGAGGTA 34512 30 100.0 36 .............................. GCGATTTTGAGTATTGATGATGAATCGCAAACTGCT 34578 30 100.0 36 .............................. TATCCTAAGATTTCTCCTAAAAACATGACTAAACTA 34644 30 100.0 38 .............................. TGACGTACCACAATGGGGATTATCTGGACGCTTATTAT 34712 30 100.0 39 .............................. TGGTCGGAATTGTGACCTGGAGTACAGAACCGCTAACAG 34781 30 100.0 36 .............................. ATTAGCTTGTAACGTTCCACAGCGTCCACCATATTG 34847 30 100.0 36 .............................. CTGGCAGAGTATATGAAAACAGATTACCAGCACCTA 34913 30 100.0 37 .............................. TTTGTCCGATATCTTTTTACATATTTTATAAATACGT 34980 30 100.0 36 .............................. GTGTTAAAATTGCGGCAATGGTGAACCCGCACCAGC 35046 30 100.0 35 .............................. ACTGTGTATCATCAATATAATTATGGAAGTTCGGC 35111 30 100.0 36 .............................. TTAGAATTTATTCAGCAAATGCGAGATGATGAAGGG 35177 30 100.0 36 .............................. GTACATACTTTCATTTTATATCTCCTTTACTTTTCC 35243 30 100.0 36 .............................. TTTATATCATCGTCATTGCGTGGGATTTCTTTGTAT 35309 30 100.0 37 .............................. TTATATCCTAAGTCTTGGCAGAGGTGAGCAAATTCAA 35376 30 100.0 36 .............................. ACATCTGAAGAAATGGTTAACGATAACAAATCAAGC 35442 30 100.0 36 .............................. TACATATTTATCCCTCCTTTTTTATTAAGCACTACA 35508 30 100.0 35 .............................. CTTTTTTTGCCAAAAACCGTGATGAGAAATTTTGA 35573 30 100.0 36 .............................. GTCGTATTGTAGTACCAGCATTATATGAACCTACTG 35639 30 100.0 36 .............................. GCGAATTCTTCTTGCGTAAACCCGTAGAGTTTACGT 35705 30 100.0 36 .............................. ATACACGTTTAATGGCTTAATGCAACAATGTCTGGC 35771 30 96.7 36 ......C....................... GTTTTTAGCGCTTGTACATCGGTTAGAATTTCATTT 35837 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 89 30 100.0 36 GATTAATAGCAACATACGATGTATTTGAAT # Left flank : ATTGATATAAATACAAGAAAACCACTTTTAGGCAATATAACTGGCGGACTTTCTGGCCCAGCTGTAAAACCAGTAGCAGTGCGCATGGTATGGCAAGTTGCAAAAGCTGTTAAAATTCCTATCATTGGCATGGGTGGTATCACTTGTGCTGAAGATGCTATTGAATTCATGCTTGCAGGAGCTACTGCTGTAGCTGTTGGTGCTTATAACTTCGTTGACCCATCTGCTTTAAAAGTTGTAGCTGATGGTATTGCAGATTATATGAAAAAACACAATATTGAAGATGTAAATGAACTTGTAGGAGCAGTACAAGCTTAAAATTGAGATTTTACCAGGTGAATTTTTGATAAATAGTTTATAAAGCTAGAAAATATAAGCTTTTGAAGCTGTTTTTTAGTATGGCTATAAAAAATCAAAATCGCCTGGTAAAATTTTTTCATATCCTTGAATACCAAGGGTTTAAAGATTATAATAAAAAAAGAAACCTTGATAAATAGAGG # Right flank : TTTAATCGATTTTATAGCAGTCTTTTCTTCATTATTATGATTAATGAAACAATGATTATTTTATAAAAAGTTGTTGACAGCCTATTTTTATTGTGCTATAGTATTCACGTTGCATTTGTTAATGTGTTTTCAAGTAGAGGTCACCGCTTCTCACCTTATGGCGCGCAGTCAGTAGGGTTACTTATTAAAAATTAAAGTTATAATGTTAATTATTTAATTTGTAATATCAGAGGGTGACGTAGGTCATCCTCTTTTTTATCGCGAATATTATATAAAAATTTATAAATAATGAGGTGTTTCCTATTAGTAAAGAATCTTTAAGAGTTAATGGTGAAATCCGCGCTAGAGAAGTTCGTGTTACCGACGTAAAAGGTGCTCAACTAGGTATCATGTCTACAAGAGATGCTCTGCGCAAAGCGGAAGAAGCTCATCTTGACTTAGTTGAAGTAGCGCCAAAGGCTAAACCGCCTGTTTGCCGTATCATGGATTTTGGTAAATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGCAACATACGATGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 17073-16521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000034.1 Megamonas hypermegale strain An400 An400_contig-110_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 17072 35 100.0 40 ................................... ATGATATCATGTGGACTACACAATCATTACAAGCCTTTAT 16997 35 100.0 38 ................................... AAGTTTGTTTTTTCATAATATCTAACTCCTTTTAATTT 16924 35 100.0 43 ................................... AGATCTAATGTTTTCATAAATAATCAACCTTTCTTTTTTATAA 16846 35 100.0 37 ................................... TCTCTAAAGTTTGCTGCTTTCTGAACCAGTGCAGATA 16774 35 100.0 41 ................................... CTTCTGCTTCTTCCCAACATTCTCTGACCGGATGCCAGTCG 16698 35 97.1 37 ...........A....................... TAGATATTGAAGGTATAACCATTTTTCTGAACTAAAT 16626 35 100.0 36 ................................... ATAATAGATATCCTCCTTTAATATATAATATAGTAT 16555 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 8 35 99.6 39 GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Left flank : CCGCGCCACTACTGGGCTCGTGGCACTTTTTAAAGTGTTTAACAATGCTCAATCGACCTCAAACCTGTTCTCAGCCGCAAACTGCATTTTCAGCCCAATAACGACGCGGATTCCAGGGCACAG # Right flank : AAAGGAGGTGATAATAATGGAAGATACGGACATCATTGGAGTTGCATATTAATTTAGAGAGGACGGAAACTATAAAAGCTCTAGCCTTTTGGTTAGAGCTTTTATTTTTAGTTATAATATTATTTATTTCATTCAATATACCGCTTAATGTAAAAAAGAGCTAAGTTTATAAACTTAGCTCTTTTCTCATCTAATACTTATTTTAATCCTTGAATGACTTCTTCGATAGTAGGCAATGGTGTTCTACTTGTAACTATATTTCTATCTTCTTTATTTCCTATTTCCATATATCGAGTCATACTATTCCATTTTTCACTGTTCGCACTCATCATATATTTTATACTTAAAATAGCTTTTAGCGAATTTATTCGTTGTTGATATGATACTAAAGACTCTGGCGATAATTTACTTTTTAGATATATTTTAAACTCTTCAATGAATTTTTGTTTATCTACTTCTATTAAACATTTAGCAAAATCCTTTTTATCCGTAGCAAAAAG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 27977-31295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000021.1 Megamonas hypermegale strain An400 An400_contig-110_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 27977 26 100.0 38 .......................... ATACGGGGAGTATGCGATAGACGTAGATTCAAACGGCT 28041 26 100.0 40 .......................... ATACTTTTTTCGCCGGTGCTTCCATCGGTATTTTTCATTT 28107 26 100.0 40 .......................... ATACGTGGCTTTAATAAATGCCACATGCCAAAATTTAGCT 28173 26 100.0 39 .......................... TACCTTTTTACTTTCATAGAACCACCTTAAATAAAAAAG A [28198] 28239 26 100.0 40 .......................... ATACTTTACAAATTCAAATTCAATCATGATATTATAGCGG 28305 26 100.0 40 .......................... ATACTTTATATATTTTTCAGTGGCTTTAATATATGCCGCA 28371 26 100.0 40 .......................... ATACTTATTAAGGATAGGGTTTTTGTCGATATCAGCTACC 28437 26 100.0 39 .......................... ATACAGATTAATGTTGTTTTCCATAGCTACTAATTTTTT 28502 26 100.0 40 .......................... ATACATGGCTCAAAGATACAGGGGCTGTTTCTGGTCGTGT 28568 26 100.0 40 .......................... ATACGAAAAGAAAAGAGGTAATATACATGAATAGGTTTGA 28634 26 100.0 40 .......................... ATACTTATCTAGGTCTGTATAACCGAATAATTGAAATTGT 28700 26 100.0 40 .......................... ATACTAATGTTTTCAAAATTCTTTTTAGATTAGGAGTAGA 28766 26 100.0 38 .......................... ATACTCATTTATATATTTTTCATTACATTCTTTAGCAT 28830 26 100.0 40 .......................... ATACGCATATCTACAAGGTTCTTTGTCCATATCGTAACCT 28896 26 100.0 39 .......................... TACCTTTTCCAATCTATTTTGTTTTCAACCAGTTCGACG A [28921] 28962 26 100.0 39 .......................... ATACGCATCTTGTTCTGTTGCAAATTTTACGTATACCGT 29027 26 100.0 40 .......................... ATACTTTTGTTGAGGGTGGAAACGAATGATATCTTGTACC 29093 26 100.0 41 .......................... ATACGCATCCCCGTCGCTCGCGTTAAGGCCTGGGAGCAAAA 29160 26 100.0 40 .......................... ATACAGTGAGGTAAGAAAAATGCTAAATAATAGTTTGGTC 29226 26 100.0 40 .......................... ATACTGTTTCTAACGCCGAAGCCGCTCCCCTCTACTAAAT 29292 26 100.0 39 .......................... ATACTTAGAAGCAGATACACCAGAACAGCGTGAAGCTAT 29357 26 100.0 40 .......................... ATACTCAATTACTTTCATTATTAATCACTCCTCAACTAAT 29423 26 100.0 39 .......................... TACCTGGTATAAGTTTCAACAGGAAGCATCTTGTAAAGA A [29448] 29489 26 100.0 38 .......................... ATACGCTAATACTATAAATATTGGCGATGACCAATTTA 29553 26 100.0 40 .......................... ATACATCAATCGAAAGCATTTATCCAAAATAACTTCACAT 29619 26 100.0 40 .......................... ATACTTCATGCTGCCCCATGAAAAGCATGTAACATTTCTA 29685 26 100.0 38 .......................... TACCATTATATTTATGTTTTAACAATACTTCTGATATA A [29710] 29750 26 100.0 40 .......................... ATACATAAGATTATGACATTCAGAAAACTTGTTTTTAAAA 29816 26 100.0 39 .......................... ATACGATACACGATTATTAAGAGCGCTAATAGCGCTTTC 29881 26 100.0 38 .......................... TACACTATTCTTACGGGTATGACTACTGGCACTGGGAG A [29906] 29946 26 100.0 39 .......................... TACCTACCTGCTATAAACTGCATAAGCTTTCTATAATAA A [29971] 30012 26 100.0 39 .......................... TACCGCAACTTACCTTTAATCTGATTGTGCTTAAAAACG A [30037] 30078 26 100.0 40 .......................... ATACAATTTTGCTCCAAAAGCTAACACGTTTATATAATTT 30144 26 100.0 37 .......................... TACCTTTTGCGAATTTGGGCGCGTTTGTCGTGGCTGT A [30169] 30208 26 100.0 40 .......................... ATACTGCAATAAGCAACAATTTTCTATTCACGATATTAGA 30274 26 100.0 40 .......................... ATACTTGCCAATTTCTTCCAAAGTCCTTTTTAAGCATTGT 30340 26 100.0 40 .......................... ATACTAATATCTTTCAGGGACAGTCATTCTGCCATTATCC 30406 26 96.2 41 ...........G.............. ATACTCGAATATTGTGTTAGCATTGCTAAACAACTATAAAG 30473 26 100.0 40 .......................... ATACTAGTAAGGTGCTTTTTAAATATAAGGAGAATATCAT 30539 26 96.2 40 .................C........ TAACTTGCTGATTTCATTCCCTTCTTTATCGAATAGAAGC 30605 26 92.3 40 ........T........C........ TAACGATGCCTTCGTACCTCTTATAGAACCTACAGCTTTA 30671 26 92.3 40 ........T........C........ TAACTTTTCCTCCTTTTGCGTACTGTAAGCAAGCACTTAT 30737 26 92.3 41 ........T........C........ TAACCCGCCATTATAAATATAAATGCCTACGCCGTAGTATT 30804 26 92.3 41 ........T........C........ TAACATAGCTTTTGCTTCTGCTGTTAGGTTTTTGATGTAGA 30871 26 92.3 42 ........T........C........ TAACATTGTTGTTGTCATTTTTCATTACCTCTTTCTTTATTA 30939 26 92.3 41 ........T........C........ TAACATAACATCTTCACGGCTGATACCGTGCTGTTCATCTG 31006 26 92.3 40 ........T........C........ TAACAGCTATCTAAGTTATTAGCTATCTTTTTTACAATTG 31072 26 92.3 40 ........T........C........ TAACTTATATGATATAGTATAAATATCGAAAGGATTATCA 31138 26 96.2 39 ........T................. TAACTCGTTAAATTCAACCGTATCAAATAAAATATTTAT 31203 26 92.3 41 ........T........C........ CCGCTTTGTTAAGCAAATGCTGACTTCTAAGTAATCCATAA 31270 26 88.5 0 .......................AAT | ========== ====== ====== ====== ========================== ========================================== ================== 51 26 98.2 40 GATAAACCATAACAATTTTTGTACGA # Left flank : CTGGCAGTGAACACGCTGTAACAGCATTTGCCCGTGCTGCTTATAAATTAGGCGAAGATTGTACTATACTAGGAACATTTTCCAGCCAAGGCAAGATAAATCCTGCGCTATTAGCTCGCCGTCAAAATAATACAGATAAAAATGACCCGCATGCAGCTACAGAACGCAATAAAAAACGCTGGGAAAGTGCAGCAAAACACCCCGATGAAAATGACATTCAAAGAGCGAAAGATTTTATCGCTGCTATGAAACATAAATTAGCATTAAGAGAAAAATATCTTAATAAATAAATCCCCAAAAGGCTGAATGATTACATTCAGTCTTTTATATTTACCAGCCCAAAAAATTGTAAATATTTTAAAACCCTTTATTTATAAGCTTTTATCACGCTTTTTTATAAAAATAGAAAAAATATTCATCACTTGGTAAAAATCAGCAAAACCTTGTCAAATAAATAAATTTAAGCTATACTAGAAATTACAAACCTTGATTTTACAAGG # Right flank : TAGCTAAAAAGGGCATAAAAAAAACAGCATGAAATTCATGCTGCTTTTTTATTTTCACTATTTATTTTTATAACCAACGATAATTTACAAAACCTGCTCCGCGGGAGTTCATTTCTCCTAAGCCTGTGCCTAATGACATATATGCCATTTTTTGTGCTATTTCATTATCTGCAACGCTTAGGCGAATTTTATCACCTAATAATTTTACATTTTTATATTCTATCGAAATAGGAACTTTATTCAAAAACTCCATTGTTGTATATAATTGAAAATTCTCATCTATATTATCATTATTGAACGAATTCCATTTATTAGCTAGATTTATGCGTATACGCCTTGCAAATTCTTCTTCACTCATCACACTTCGCCAATATCCTCTTTCATCTTTTACAATGAGCGGTGTTAAAGTATAAATGAATTCAATTATTTTTTTCGGCAGAATTCTAAAATCCACATTTAAACCTTTTATATATTTTGTATATGTATTTACACAAATTTGT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACCATAACAATTTTTGTACGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 33715-34207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJLZ010000021.1 Megamonas hypermegale strain An400 An400_contig-110_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 33715 30 100.0 39 .............................. TATAATACCCTAAAGCATTAGCACCATAAATACTTTCAG 33784 30 100.0 36 .............................. TTTTTTATAAGCAATATCTTTAAACCGTTCTAACAC 33850 30 100.0 36 .............................. TAGACTTCCGTATATTGATATGTTGTTCCCTTACTA 33916 30 100.0 36 .............................. CGATTTTGGTGCTATACTTTTTTAAGGCAGAATGAT 33982 30 100.0 35 .............................. AACAGAAAATCAAGTGCTTTGTTTTTAGCTTCTTC 34047 30 96.7 36 ..........................G... AACCTAACTTCAATATTTCCATTCATATATCTTACA 34113 30 100.0 35 .............................. GTTAAATTGTCTGTTATAAGCTCAAATTCTCTAGT 34178 30 83.3 0 ...............T.......TA..A.A | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.5 36 GATAAACCATAACAAATTTTGTACGAATAC # Left flank : ATAACTCTCATCTGTAAAAAAAGATAATACTAAAGTCAATAATATTATAGGTATGCTACCTTTAAAAAATAAATATATTGCTATAATAAATAACGTAATAATCTCTGATATCATACAAAACGTAATCATATCCTTTCTAATTAATAATCAAATTCACTACCACTAATTTAATTATATTCTATCTTTTTTTATTTATCTAATCTATAATAAAAATTTATTATTTTTTAACTCAATGCATTATTATTTTATTTAACTACCAATATTTTTATTTATTTCATATCTTACATAAATATAATACTACTTTTCTTTTAATTAATAAACCGATTTTATTTTACCAACTATTTTTAATTAAATATATTATAAGTCCTTAATTTATAAGCTTTAAAGCAAGATTTTAAATAAATTTAAATTTTTGTCTTCCCGCTGGTAAAAATATCAAAAACCTTGTCAAATAAATGAATTTAAGCTATACTAAAAATACAAACATTGATTTTACAAGC # Right flank : AAGAGTTAAATAGCAATCTATAAATGATGACTATTTAACTCTTTGTTATTTAAAACACTTTTATGATATAAAAAAACCCTTTAACAGATTTTCTCTGCTAAAGGGCTTTTTGCTTTATTATTACAATACAATTTTGCTGAAGTCAGCGATTGTTTTAACGAGGTTATCGATATTTTTCAAGAGAGCAAGACGATTGTTTTTAATCTGTTCATCTTTATCCATAACCATTACATTATCGAAGAAATTATTGATTGGTGCAGTGAGTGCCTGCATTTCTTCAATAGCTTTTACATAATCCACTTTAACGATAGCATCATGTACTTTGCTTTCAACTGTACCGTATGTTTCATATAAAGCTTTTTCTTCATCGAGTGTGAATAATGCTGGATTTATTGTAGTATTTTCTGCTTTTTTGCTGATATTGTTTACACGAACGAAAGCTTGAATTGCATCATTGAGTTTGCCAGAGCTGATTTCTTCTGCTGTTGCGCAAGCTTTAG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACCATAACAAATTTTGTACGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //