Array 1 50590-49633 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLR01000003.1 Porphyromonas gingivalis strain WW2931 NODE_3_length_78308_cov_22.2348_ID_20917, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50589 36 97.2 30 ................A................... TAGACTTTTAACTTCTACAAAAATAATTAA 50523 36 97.2 29 ................A................... AAGTCCTTAACGGATTTACTTCCGTATAG 50458 36 97.2 30 ................A................... AAGGTCTCCAAAGCACCGCTACCGCGCGGA 50392 36 100.0 30 .................................... CAAATTCCTCAAAAAGCAGAAAGTGGTCTG 50326 36 100.0 30 .................................... ACTAATTTTTGAAGGTGCGACCGTTAAAGA 50260 36 100.0 30 .................................... AAAATAGCCAGTTTCTATGATAGATTCTCT 50194 36 100.0 30 .................................... CATGATAAAAGTCTTAATTACATAGAATCA 50128 36 100.0 30 .................................... CATCAGTTACATCTCTAAATATGGTGCTTT 50062 36 100.0 30 .................................... TATTCCGAATTTTTCTCTTTTGATGTCCGC 49996 36 100.0 28 .................................... AAAGGCAACAAAAAGTTGCTGATCTCGG 49932 36 100.0 30 .................................... TTATTCTATCATTATTATAAAAGCTCTTTA 49866 36 100.0 30 .................................... TCCGATGAGATGTTGACTAAGCTTACTCTT 49800 36 100.0 30 .................................... CTGGGCGGCGGTGCTACCCACCGTGCGACC 49734 36 100.0 30 .................................... GATAAGCAACGCTTGTATGGGGAGAGAAGT 49668 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.4 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATTTTGTATACAAATCGTTTTTGATTTATATATAAATCGATTGCGATAAATATATAGATTGCAAGCCGATTTGATATAAATCGGGCAACTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCAAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCGCTCATACAGCAGGTTTGCATCAGCCATACGCAACGCCGGCATAAACCACACAAGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGATACAAATTCGCTGAAGAAGGGAGCACCTCGTTCGCCCGCAAATGTAGTGAAAAAGCCCCAACGCGGAAGAATCCCCACACTACACCCTCCCTCTACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : TACCCCCATCGAATTTGAAACCAATTGAGAAGTCATAATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCATTGCAAACCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCGCTCAAAAGTTCAACGTTCGCTTTTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACGGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 22613-21185 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLR01000005.1 Porphyromonas gingivalis strain WW2931 NODE_5_length_74394_cov_20.2971_ID_20921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 22612 46 97.9 30 ...................................-........... TATCCCTAATCTTCATATTATTATCCATTA 22536 46 97.9 29 ...................................-........... ATCAAAAATATTTTCAGTTTCAAAACTCT 22461 47 100.0 30 ............................................... GCGCAATCGATGAATACTCCTCGATTACTA 22384 47 100.0 30 ............................................... ATAGATGAAGACAGGCTTGAAAACAGAAAG 22307 47 100.0 30 ............................................... CAACGGAAGAAACGCAAACTAAATAAGTAT 22230 47 100.0 30 ............................................... GCATAATAGCGATAATCAGGTTCTTCTCCC 22153 47 100.0 30 ............................................... TCTTTTTGTTGTAGTTATTAATTATTTTCT 22076 47 100.0 30 ............................................... GGCGATGGCGGATTTTGTAGACCTTTCGAT 21999 47 100.0 30 ............................................... ATAATTTTTTGTAGCTCTTGTAGTTTCATA 21922 47 100.0 29 ............................................... CGGGGTGAGGCAGGTCTAAATAGTAATGC 21846 47 100.0 30 ............................................... GGTAACCAAGGATGTCGCCCCGCTCCTTGG 21769 47 100.0 30 ............................................... CAAAAGAGCATGCAGGGATACACGCTTCTG 21692 47 100.0 30 ............................................... CAATATAACGGTCGAAAGCCCGTATCCGCA 21615 47 100.0 29 ............................................... CTCGTAAAAGAGTTCGACGACCGCCTGTT 21539 47 100.0 30 ............................................... ATAAATTCTTTATTCCCTCCAAGGTTTTTA 21462 47 100.0 30 ............................................... AGTCTGTGTATTTGACTGCTCCGCCGTGCT 21385 47 100.0 30 ............................................... ATACAGGACGTGTTAGTGTATATGCACGTC 21308 47 100.0 30 ............................................... GTCCTTTTAATTCTGAAAATTCTACTATTG 21231 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 99.8 30 ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC # Left flank : AAATGAAAACGATTTGTATACAAATTGAAAACGCTTTATATACAGATCGTTGTACGGCTTGTTTTAAGTGGAATTTAGATCTATGGCAGTTCCTTTTCCCTCCACTTTTACCTTGCTTTTCTCCTCTCTACAGATACTTATTTGGAATCGTTCCAAACTCGTCTTCGTTGTTGAAAACTTTTTTGGCGCATGATTTTTGAGCAGATTATTATTTTCGTGGTCTCCCTTTTTTCACAGGGAATAGCTTTCAGATTTAGTAATGTTGTTGCAACGCACAGCCGGCGAAATCTTTTATGATTAGTTTCTTGAGCTCTTGCAGATTCATAAACTTTGTTTATCTTTGTGGCAGATAAAGCTGGTTGGCGATGTGAGTACGGGGGAGTGTTATCCTGTTTCCTTGCCGATCAGCCTTTATTTTTTTCGGGGAATGGCCCTTGTGCAAAGTACGGCTCCTCCCATACCCTTCCCCCTTTGCTGATAACCTCAAACCCGAATCGGTA # Right flank : TTAATCCCCGTAATCACCTGTAATACAGGACATAGAGGGTGATTGTGAGTAAAAAAACAACTGTGCGTAACTGAAAAGCCGAGATTTCTCTCGGCTTTTTAATTTCTATGCCCCAGACGAAAAGCGCTAATTCCACAAAAGATGATAGAATATATTTAAAAAAGTTCAAGCTGAAGGGGTGGCTGATAATACTCTCTTCCTTTCCCACAAATGATCTCCATGGCTGAAAATTGTTTGTCTGTGATTGTCATCAAACCTATTTTGCCCTTTTCAGGAATAGCAGAACGGACCCGTCGGCAATGTGTTTCTGCATTCTCTCTACTTGCACAGTGTCTGATATAGATAGAAAATTGGAACATCTCGAAACCATCTTTAATCAGATTTTTCCGAAAGATTGCTGCACGTTTCCTGTCGGCTGCAGTTTCCGTAGGTAGATCGAAGAATACCATTACCCACATACTTCTATAGGCTGAATATCTGGATCTGTAATGACTCATTAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //