Array 1 173692-172430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLF010000004.1 Listeria seeligeri strain FSL W9-0482 NODE_4_length_418692_cov_103.191338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 173691 29 100.0 37 ............................. TTAAAATAAACATTGAGAAAACCTAATCCCCCATCGA 173625 29 100.0 34 ............................. TTAGAAGGATTAGATTTAACTAAAGAAGAACGTG 173562 29 100.0 36 ............................. AACCTTATCTAGATGGGCTAGCGGAATGGAGAGAAG 173497 29 100.0 34 ............................. AATGGGAGATAATGTATATGGGTAAAAAGTCCTT 173434 29 100.0 37 ............................. AAATTGGAAAAATGGGCTAATGACATCCGCATCATGA 173368 29 100.0 35 ............................. CATTTTAAGCTAATTTGACAATATATCTGTATAAA 173304 29 100.0 36 ............................. ATCTGTCATTTTCATGTGTTTTAACAGGTTGCAACG 173239 29 96.6 35 T............................ CTAGTTAAATCTTTGGGTAAAAAAATATCATCTGG 173175 29 96.6 40 T............................ TCAGTCGTTCGGTTGTAGTAACATAGCGCTCTACTTCTTG 173106 29 96.6 36 T............................ GCCGGAACAAAATTAGAAGTTGTGTACGGTGAACGG 173041 29 93.1 34 T...............A............ AATATGTGGCGGATTGGATTGTCGATAGTAAACG 172977 29 96.6 34 T............................ GTGATTGAAGTTCTTCCTAAGTGTTCTACAACAC 172914 29 100.0 36 ............................. ACAGGAAAGGGAGAAACGTCATTAGCTGGGCTAAAG 172849 29 96.6 35 ........................C.... AAAAATTTAGTAACTGCGCATGATAATGCGGTCAA 172785 29 100.0 37 ............................. ACCTGAAACAGCGAGCGGGACAACGGGAAATTTCACC 172719 29 100.0 35 ............................. AAAGTGTAGAAAATGACGACTACAAGGGCTGGGGA 172654 29 100.0 36 ............................. ATGCTTACCATACAACCCGCCATAGCCGTTTTTTCC 172589 29 100.0 36 ............................. CCTGTCCCACCGACGACGAGCGCATGCGGATTAGCA 172524 29 100.0 37 ............................. GTGGTCACAGCGTTCTTGTTGCCAGCTGGTGAGCCCC 172458 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================== ================== 20 29 97.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAAATTTGGTGGTGAACATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTGTGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTTGGGGAGAATGGTTTTCGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATCTCACCTGCTTTTTACGGTGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCACCCATCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 183619-182299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLF010000004.1 Listeria seeligeri strain FSL W9-0482 NODE_4_length_418692_cov_103.191338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 183618 29 100.0 35 ............................. ACTGCTAAGATGATGACTGCTCCTTTCACTTTTAA 183554 29 100.0 36 ............................. AGACATATTTATTAAGAATACAAAGAACGGAACACA 183489 29 100.0 35 ............................. CTTTTTGTTTTTAAGCGAGGTGTACCTCCCTTTGT 183425 29 100.0 34 ............................. ACAAGATCGTGACTGCTGAGCCTGTTTCTGCCAA 183362 29 100.0 35 ............................. CGACCCCAGCGGGATAGATATGAGTAGGGATATCG 183298 29 100.0 35 ............................. TTGTTTATGACCTCATCGTCATCCAATGGCTTATC 183234 29 100.0 37 ............................. TATTTATAACGCCAATTACCTTCTTCAGTCGCTACAG 183168 29 100.0 36 ............................. GTTTGAATGCTCTGATTAAATGCTGTTTGAGATTGC 183103 29 100.0 36 ............................. TCCATTCTGAAGTGAAAACAAATTATTTTGTCTTTT 183038 29 100.0 35 ............................. TTAGATCAAATAGATTCAATTCCTCTGATGGCACC 182974 29 100.0 34 ............................. GAATACGGGCGAAGCATTACCGTCGTTCGTTTGT 182911 29 100.0 35 ............................. AATTTAATTTAATAGGAACATTCATTACAGACGCC 182847 29 100.0 37 ............................. GTTTTAGTCAGCAATGCATTAATTACTTTCATACTCG 182781 29 100.0 36 ............................. CAGATACATCTACAACACGCAAAAGCGTCCCAACAG 182716 29 100.0 37 ............................. TAGTCATCATCTAGTTTTATTCCCATCACCACATATC 182650 29 100.0 35 ............................. AATCGAACGGATATTCCAATACTCGAATCGCCTTG 182586 29 100.0 36 ............................. CCACGTGGGGAAAGTGTACCCTGCCCTGTTACTAAT 182521 29 100.0 36 ............................. CCAGAAAAGTTGCATATAATCTTTCCGCTTAGGTTC 182456 29 100.0 35 ............................. AACGATGAAAAAGCACAAATAGAAGCATTAAAATC 182392 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 182328 29 86.2 0 ........C....C..A...........G | T [182301] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.2 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TAAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAAGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCACAGATAGTAAGCGTTTACAAATTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATTCGTTGGGAGAGAATGAGAGTGCGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 190138-189852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLF010000004.1 Listeria seeligeri strain FSL W9-0482 NODE_4_length_418692_cov_103.191338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 190137 29 100.0 35 ............................. GATTTAAATAGACAAGACATAGCAAAAGATTTTAA 190073 29 100.0 36 ............................. AAAAACCGTTTAGAAGACAAAGACAATCACACTATT 190008 29 100.0 36 ............................. TATAAAAACATAGCTAACAAATATCCAGAGCATGCG 189943 29 100.0 34 ............................. TTTTTTTCAGATATATGCAACAAATGAATTTCTC 189880 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 99.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGTGTAGAAAACAAGGAGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGTATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGGCATGACGGGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //