Array 1 325377-324025 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEEN01000014.1 Enterobacter kobei strain ECC3408 ECC3408_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 325376 28 100.0 33 ............................ CAGTAGAAATCATAGCGGGTCTGCCTGCTGAAC 325315 28 100.0 32 ............................ TCAGCAGCAGACACCAGATCTCTCTCCCATTT 325255 28 100.0 33 ............................ CTGCGTAGCCTGGTAATTAGTACGAAGAGCATT 325194 28 100.0 32 ............................ TGTTGTTGAATAAACGCAAATACATCTGCTTC 325134 28 100.0 32 ............................ AACCGAAAAAGAAGTTACAGCCGCGCAACGTC 325074 28 100.0 32 ............................ GGGTTATACCGTCACGCGGCCAACCGAAAAAG 325014 28 100.0 32 ............................ GCGAGAGACAACCTTGTCGTAATTAACAATGT 324954 28 100.0 32 ............................ AAAGACGTCCAAGTCAACTGGATCACCGTTAC 324894 28 100.0 32 ............................ CACAAGGAAGATGATTAATGCAAATCAAACAC 324834 28 100.0 32 ............................ TCAACCCCAAATGTTGAGCGGCGCACCCCAGC 324774 28 100.0 32 ............................ ATGGAGTCAAACCGCAGGCGCCAGGCTGAGAT 324714 28 100.0 32 ............................ AAAATCACCGAAGTGGCGATCACTTCCGTTCT 324654 28 100.0 32 ............................ CTCGAGCATTTCGATAACTTCGCGGCGCTTGT 324594 28 100.0 33 ............................ CTCTTTGACTGGCTGAATACTCATCATTGCGCT 324533 28 100.0 32 ............................ TTTTTTGACACCCTACGCAGATTGCGAAGAAC 324473 28 96.4 32 ........T................... CGCCCGAGGTGATATCAATATATTTGCTAAAG 324413 28 100.0 32 ............................ GAAGGCGGAACGCTCGTTCGCAAACATCTCAC 324353 28 100.0 32 ............................ GCAGGTCACTAATCTGGGCGATATGACGCAGA 324293 28 100.0 32 ............................ TGAAAACTTTTGTCAGTTAGACCGTTTATGGA 324233 28 100.0 32 ............................ TTGTAAGTCGCTCACTATCCAGCGCCGCGAAC 324173 28 100.0 32 ............................ CGCATCAATACGCGCGGCGATCTGCGTCATAT 324113 28 100.0 32 ............................ AGTGATGGGGGATATTACGGCAAAGCCGTAAT 324053 28 92.9 0 .........A.....C............ | C [324028] ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGGCCACGCGCTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGCTCATTAATTCCAGTGACGCGCAAAATGTCCGCTTTCGACATCGCCGTCCACTCATGAATATTGTCGAGGACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAGCCGCATACCTCTGTTTGCTGGTAAACCGGCGTACCGCCAAAGCGCGTTATCAGCAGGTTTCTGCGCGGGGATCCATGTTCTCATGTTGCCTCCTGGGTGATGTCATTTGTCATGGTTAAGTATAGTCATTTGTCATAATGAATGGAATGGGTGTTTTTTAAGCAGGGTGGTTTATAAGAAGAAGGGCGTTTGACCCTAATTTTTAGTGCGTTTGTAATGCATTGATTTTAAATGGATATTTTGAGAGGGTAAAAAAGAGGGTAAAAGATGGGTTTTTAGCTTTTTTTGTATGAAAATCATAATGGTGTGGGGATATTATTTGA # Right flank : ATAGAAAATAAGGACTCCCCTCCTTACTTTCTACACTGTCGAGCAGACAGCCCCGCGCTGAAACGAACCGCCAAATAATTGTTCAAATAATCAACAGCACCACAAAAAAATAAGGCCGGGAAAATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTTAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTTTCGGCGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 336004-335194 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEEN01000014.1 Enterobacter kobei strain ECC3408 ECC3408_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 336003 28 100.0 32 ............................ TAAGTGAGCGAGAGTAGGCCAGTAGAAATCAT 335943 28 100.0 32 ............................ GGAGAGGAGCTTATCGTAATAACGCGGAGGAC 335883 28 100.0 32 ............................ ATAACCAACCTCGCAAATAGAATAGAGCGCAA 335823 28 100.0 32 ............................ GCTGTGAGTTTTGGTGTCACCTGGCACAGTTA 335763 28 100.0 32 ............................ GGCATCGGCCGCGCACACTTCAAATCGAAGAA 335703 28 100.0 32 ............................ TGCTGCGGTGCTGCTGCTAGCATGGCCACAAC 335643 28 100.0 33 ............................ GTGGAAGCGCGTGAAAAATTACGCTACAGACTT 335582 28 100.0 32 ............................ TCAGACCGAACAAAGAGACGCTGCGCACGTTT 335522 28 100.0 32 ............................ GACGTCATCACATACGCGGCCCACGTCACATC 335462 28 100.0 33 ............................ ACTTCGCGCAGGTGCCACGACTCCACGCCGATT 335401 28 100.0 32 ............................ ACCACTGCCCGCGACGTACACCCAGTGCGCCT 335341 28 100.0 32 ............................ AGTACGGGGCGAATATGTCAGAGTTCGCCCGC 335281 28 100.0 32 ............................ TCTACAGGACAAAACTGAATTACCAGCAGTCT 335221 28 75.0 0 .....................ACCTCTC | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCTCAAACGCAGCCCGTATGCCGTTGCCTTGGTGCATACCTGGAAGAAATGAAAACCGGCCTCACAGAATCAATGCGTGACTTTCAGGTGGTGGAATTTGACAACGAAGCCGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGAGACAGAAACGAAATGCGACTACTGCCGGGCATTAAACCATGTGCTGCTGGTATCGCATTTTGACCGCGATATGTTGCCGCACCTGACGGGATTACTGCATGACATCACACATTCAATGGCGGCAGATGTGGTATCTCCTCATGATGCTGGAACGGGAAATTCTGTTATTTCTTGAGTGGAGTGCGCACCGCCAAGGGATGTCCCCTGGCGACAACGGAGAAACCCTTTTTTTGAGATGCTTTATAACTCATTGATTTATAATGTTTGCTTTTACGTTGCAGAAAAAAGGGTTTAGCATGGTAACGTTGCTTAGTTGCCTTAATAACAATAAGATAGCGCTGTTTTCTTCCA # Right flank : AAACCAACCCACTATAATATTCACCAAACCTATTTAAAACCTTATACCATTCAATCTGCACTCTCTGCTTCCACAATAAATAAAAAACCTATTCACGCATAAATTATATTCCATTGAATATATTATTCGTAAAAATAATATATTGTCATGAAAACATGATTTTCCACTTTATTACCACGATGATTATTATTCATTTGATGTCCGTCACATTTGTTTTCATTCGTTCTTCGCTAACATACTGCACATTCAACACCTTGAAATCAAAGCCCTTGCCATGTCCGTAAACAGCATCACCCCTACAGACTTAAAAACCATTCTGCATTCAAAGCGTGCCAATATTTATTACCTGGAAAAATGTCGCATTCAAGTGAATGGTGGCCGTGTTGAATATGTTACCCAGGAAGGAAAAGAGTCGTTTTACTGGAATATTCCTATCGCTAATACTACGGCGGTAATGCTGGGAATGGGAACCTCTGTTACACAAATGGCAATGCGGGAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //