Array 1 44-1013 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTA01000052.1 Mannheimia haemolytica MhSwine2000 Cont56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 44 32 93.8 35 C....................C.......... CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA 111 32 93.8 36 C....................C.......... CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 179 32 93.8 35 C....................C.......... GTGGCACAGTAACACGAGCAGATGCTGATAAACGC 246 32 93.8 34 C....................C.......... CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG 312 32 93.8 36 C....................C.......... TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 380 32 93.8 34 C....................C.......... TGCGATTTTTGGATTTTTCGGGCGATAAATGATA 446 32 96.9 34 C............................... TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG 512 32 100.0 35 ................................ TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA 579 32 100.0 34 ................................ TTTACCGTTTACCGATTGGATTTTAATGCTAGAG 645 32 100.0 35 ................................ CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC 712 32 100.0 35 ................................ CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC 779 32 100.0 37 ................................ AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA 848 32 100.0 35 ................................ TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT 915 32 100.0 35 ................................ CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 982 32 93.8 0 ..........T............T........ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 96.9 35 GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Left flank : AATTGAAACTTCTTGAATACCTCCGGAGTCAGTTAAGATAAGGC # Right flank : CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Alternate repeat : CAGCCACCTACGCGTGGCTGCGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.10,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 190-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATTA01000005.1 Mannheimia haemolytica MhSwine2000 Cont13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 189 32 100.0 36 ................................ CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 121 32 100.0 34 ................................ TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG 55 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 100.0 36 CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Left flank : TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA # Right flank : CCTTTTTCAAGAATCAAGATTAAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCACCTACGCGTGGCTGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //