Array 1 147890-149508 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCKI01000003.1 Serratia marcescens strain 2880STDY5682957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 147890 28 100.0 32 ............................ TGGTGCAAATACAGCGAGTGTTGCGGTAGAGG 147950 28 100.0 32 ............................ GCCGGCATAAATCCACTGGCGCAGGCCGTCGC 148010 28 100.0 33 ............................ GCCAGGGCCTCGACCGCATCATGATCGGCTGGA 148071 28 100.0 32 ............................ GTCCGCATTGATTTTCCCGACGGCGCGGTCAT 148131 28 100.0 32 ............................ ATCACTAGCGCATCCAGATTGTGATAGTCGCC 148191 28 100.0 32 ............................ GAAAGCAAATACTGCTGAGTCGGGCCAGCCAG 148251 28 100.0 32 ............................ ACTTAGTGCTGGGTGGGTATGGTGCAAATGCT 148311 28 100.0 32 ............................ TGGTCACCGCCGGACAAGACGGCACGCCCCGT 148371 28 100.0 32 ............................ TATGACACCGACCGCAGCCGCGGCGTCAGCCA 148431 28 100.0 32 ............................ AACAAAACCTACCCGGCGAGAAAGCTGTACCC 148491 28 100.0 32 ............................ AGGCGCACGACAAGCGGGTTTAAAACGATGCG 148551 28 100.0 32 ............................ AGTGAAACCGATTGAAAAGTTTCACGCGAAAC 148611 28 100.0 32 ............................ GTTAGAATATTTGGTGTGAATAGATTGCATGG 148671 28 100.0 32 ............................ ACAAACTCAACCTTGCGCTGACGGGTGTTGCG 148731 28 100.0 32 ............................ AGCCACAACCCAAAATCGTTATCAAGCGCCAT 148791 28 100.0 33 ............................ CGCTGTAGTTCTGCCCATCAAATTTGACACCCT 148852 28 100.0 32 ............................ TTTTTCGCGGGATCATACAAATGCCAGTAAAT 148912 28 100.0 32 ............................ GGGAACGAAAGCACGCTGCAGGCCGCCGCCGA 148972 28 100.0 32 ............................ AAACTCATCGACAACGTTGGCAATTTCACGAA 149032 28 100.0 32 ............................ GGCACAAGAAGAGGTTTTTTGCCTTCTTTCCG 149092 28 100.0 33 ............................ ATGAGCGCTACAACAACCAGATAAGGATCTAAC 149153 28 100.0 32 ............................ AGCCTGATAATTTGTCCAAATCGCCACTAATC 149213 28 96.4 32 ...............A............ CCGGACAGGCCGGCGCAGATCCACAGTTCGTC 149273 28 100.0 32 ............................ GTTCGCGCAAACGGGAAATCGTGATGCAGCCT 149333 28 92.9 56 .........T...T.............. TAGCTGGCGGGTAGTGATTTCGCCGGTATCGGTGCACATGCGTTGGTAGTAGATGA 149417 28 92.9 33 ..T..A...................... CCGACTGCGGCTACGCCTTGTCGTGACCACTCC 149478 28 96.4 0 ....................A....... | A,A,G [149498,149501,149504] ========== ====== ====== ====== ============================ ======================================================== ================== 27 28 99.2 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAACGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGTCAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTTGGCAATTCAGGTCATCTGTGGGGGCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCTCCCTAAAGTGCAGAAATGTCACCTTACCCCGTTCCTTTTTGCCGAACCCTTTTTTGAGTGTCACTTTTAATTTATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGACTTTATTTTTCTGATTGATGAATATTGACTCGCTTGCAACGGATTTCCCAGAAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTCTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGTGTCGAATATGTCACGGATGAAGGAAAACAGTCTCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 157990-159877 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCKI01000003.1 Serratia marcescens strain 2880STDY5682957, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 157990 28 100.0 32 ............................ TGCTGCATCACGAAACGCCGCTGGTGTATTGG 158050 28 100.0 32 ............................ CGCGACGGTCGGCATACCGAACTTGTCCAGGA 158110 28 100.0 32 ............................ TGTTCGGCGGCTCGGCCGGTTTTGCGGTTGGC 158170 28 100.0 32 ............................ TGGCGGGTGAATACGCGCCGCGACTGCGGGGA 158230 28 100.0 32 ............................ AATCAGGGGGCAATAATGGCGACGATTGACCT 158290 28 100.0 32 ............................ ATTACGGCCTGCGTGATAAAGTCAGCCGGAAC 158350 28 100.0 32 ............................ TTTTCATAGTGGTTTCACAGTCCCTTGAATAG 158410 28 100.0 32 ............................ GACCGGAAGTGGGTAAGGTTCGCCTGCGTCAA 158470 28 100.0 32 ............................ AATAATTCAGCAATATCGAGCAGGGGGATTTT 158530 28 100.0 32 ............................ GAAATGCGTGAAAACCGTGGTGAGATTTTCGG 158590 28 100.0 32 ............................ TTACTGGATTATTAATCACCCCGTGGGCGTCC 158650 28 100.0 32 ............................ AATCAATTTTTATCTGAATCAGGACAAACAAT 158710 28 100.0 32 ............................ GGATGAATCGCGGCGTGATATTTCCAGATGAC 158770 28 100.0 32 ............................ TATTCCGAATGCGTTAAAGAGTTGCCCAAATA 158830 28 100.0 32 ............................ TGCAGGACATTGAGAAGGTTCGCGCGGCGAGC 158890 28 100.0 32 ............................ TTCTCATTTTTACCCTGTGCCTGCTGACTGCC 158950 28 96.4 32 ...........C................ GGTAAATCATCCCACTCGCACGTTCGCATATC 159010 28 96.4 32 ...........C................ TCGCCAGTCTTACCGCTGTGCTTGTACCACAG 159070 28 96.4 32 ...........C................ TTATTGAAAAGCCCGCGTTTCGCCGGCGGCTC 159130 28 96.4 32 ...........C................ GTCACCGGCAGGAACGGACGCGGGCGGATCAC 159190 28 96.4 32 ...........C................ AGGACGACCTGAACACGTTTGTGCAGCAAGTC 159250 28 96.4 32 ...........C................ GAGGATTTGGCCGTGTTTGAGCAGACGGTCAA 159310 28 96.4 32 ...........C................ TGTACCGCCGGTGCCGCCAACAGAGGCGACGC 159370 28 96.4 32 ...........C................ TGCGGGCGCAAAACGGCAATCAGATGAACCTG 159430 28 96.4 32 ...........C................ GTTGACCGCCGGTACTTTCACTGCTGGCCTGC 159490 28 96.4 32 ...........C................ ACGGGACTCATGGCTTCAACCAAGGGGGCCAG 159550 28 96.4 32 ...........C................ AGTGGCAAGCAATGCGCGCTAAACTTTCTGCT 159610 28 96.4 32 ...........C................ TAAATGGTGCCAATTCGCAAGTTTGTTACCTT 159670 28 96.4 32 ...........C................ TTGAATAATACGTTTAAGGATTAAAAGATGAA 159730 28 96.4 33 .............C.............. AATTTACGCAGCGGGTTGCCGACTTTGATTTTC 159791 28 96.4 32 ..G......................... CCGCGCTTCGATAGCGGCAAGTGTGGCACCAG 159851 27 82.1 0 T............C......-..T...T | ========== ====== ====== ====== ============================ ================================= ================== 32 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGCTGACGGCATTGGAGGGATTCGGCTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCAGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCAAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCTGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCGCTGCTACGGTACCCTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACTGAGGGATTTGCCTATTGTTCTTTAATAATCAGTTTGTTAGTGATTTTTTTTGTTCA # Right flank : TAGGGGGGATAAAAATTTACCGACAGGTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAATGCCAGCGTCAGCTCCCCTTTTCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGAGGTGTCGGTCATCGTACGCCGCTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //