Array 1 3079-2318 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUJ01000013.1 Corynebacterium ulcerans NCTC 12077 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3078 29 100.0 32 ............................. ATCGGCAAAGGCGTAGGAAAGGGACGCAGCGG 3017 29 100.0 32 ............................. GGGTAGGCATCATGCCCACCAGTCGGCTGCTT 2956 29 100.0 32 ............................. GGATGTGGCCTCCTTCTCCGCGATAGCGGAGG 2895 29 100.0 32 ............................. ACGTCAAGTCTTCCCATTACCTGAATTCGCTC 2834 29 100.0 32 ............................. CAAAGGCCCCCACAATGTGGAGGCCTTCTCAC 2773 29 100.0 32 ............................. TGAGCATCCGCCGCAGCACTCGACGCCTCATT 2712 29 100.0 32 ............................. ACCGCTGTGGTGCTTAAAGATGGGCGCCGTTG 2651 29 100.0 32 ............................. ATATTTGCGGTATTGATCTTTTGCCGTGGCAG 2590 29 100.0 32 ............................. ATGTCTTTATCCTTATGTAGTGGGTGGGTTTT 2529 29 100.0 32 ............................. CGCTGCCAACAGCATCGAGCTGATATGGGTCG 2468 29 100.0 32 ............................. CAAGTCATTCCGCGTTTTGATTTGCCTCGCCT 2407 29 100.0 32 ............................. GACTTGCACGCTGACGCTTACCGGTTTGCGAT 2346 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : | # Right flank : TAGCTTGACACTTGCTAGATATATAGTTTGTGTCCACCACTACGGAGGTATAAATGTCTATCACGCCAGAACGGGTTATGCAGCTTTTAGGTGAAGGTATGACCCAATCCCAGATTGCTAGGGAATACGGGGTTACCCGTCAATACATCTTCACTCTTGCAAAAAGAGGAGGGCATGAAGCTAGGGAAATGGAATACATCAAAGATGACATACCTTGGCCAAAAGTTAAAGATAAGCACCGCGATAACACAATCTATAAAACGCTACGAATCCACGCCCGCTATATGGAACGGGGACAAGAGGGGGTACGTGGTTCAAGTTATGTTAAACTGCTCGGCATGTATCGAAAACTTGTTCGATTCAATCAAGTTATCGACTACGACGAGTCCTACCCACCTGTAAAAGGTTTGTCGAATACAGGCGGGTTTATGTACGTCCCGAGGTCTCCAGAAGACGGGAACCTCATTATCAAGATGAAGCCCGGTGTGCGAATCACGAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 2110-2870 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUJ01000014.1 Corynebacterium ulcerans NCTC 12077 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2110 29 100.0 32 ............................. CCCGGTTGTGGAGGCGCAGTTCACGGGTAATG 2171 29 100.0 32 ............................. ATCACGAGCCAAGATCACCGCCCTACCGAACC 2232 29 100.0 32 ............................. AACGGGGGTAACCCCTAGGCCGTGGTATGTGC 2293 29 100.0 32 ............................. TACCACATTCGAAAAGCCCACGAGCCAGGACG 2354 29 100.0 32 ............................. CAGCGGTTTTGTAGCAATTTTTTAATAACGTT 2415 29 100.0 32 ............................. AAAACTGCTGCTCAACCCCGCCGCCTCCGCAA 2476 29 100.0 32 ............................. CGATCCCTAGCTATGAGCGGTTTTTTAACATC 2537 29 100.0 32 ............................. AGCCCCCACATATCCATTGACGTAGGCTTCAT 2598 29 100.0 32 ............................. CCCCAGCACCGCGTGGGTGTGGGGGTTGCAGA 2659 29 100.0 32 ............................. CGGGGCACTGCCCTTGTATGCGACGCGGGGGA 2720 29 100.0 32 ............................. CACTTTGTCTAGCAATGTCAAGGCGTGGGTAG 2781 29 100.0 32 ............................. GTCTGTGCACGTCGTGAAGTTCAAGGTGTACG 2842 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : GAACACCGCCAACCCCAGAAACCCTCGAAACTGCGACTGCTCAACATCAAGGATCTGCACACCGTTGGCAGCTAACACACGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTTGCACGACGCACCTCGATTCCTCCCAGTACTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGGATGCGCACTTTATCCTCTTCCTACGGATCGAATCGCCTTATCTTTCGACCTTGTGGTTCTATGCCTTCCCTTGGATATTGCGGGGGTATGCAATAGTCTTTCCCACTTTTGTCATGGTCTAATAAGGGAGGCTAGTTTTCTCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGCGAGTAAACGCGCAGGTAAGTTAGT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 139636-139173 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUJ01000001.1 Corynebacterium ulcerans NCTC 12077 contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 139635 29 100.0 32 ............................. AGCCGATGGGAGAGTCCTTCGGCTGTCCAACC 139574 29 100.0 32 ............................. GCGCGTTAAGGGGGTATCCCCACCGACCCACG 139513 29 100.0 32 ............................. CCTCAGCCACTTACTTCCCACCAACTAACCAC 139452 29 100.0 36 ............................. GAGTATGCCGCGTAATCACCCGCACCAACTGTGACC 139387 29 100.0 34 ............................. GAGTACCGCGCAATCACCCGCACCAACTGTGACC 139324 29 100.0 32 ............................. TTACCGCATTGGCCACTGCCAACACCACGATC 139263 29 100.0 33 ............................. CGACTACATCGCCAAATTCGGTTTCAGCTTCCC 139201 29 93.1 0 T.........................C.. | ========== ====== ====== ====== ============================= ==================================== ================== 8 29 99.1 33 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CATTATGATGGAGATCCTCACTCCGCATCTCCCCGAGCGTACCGACGACCGCCTCATCGGCGGAAGAAACCACGAAGTCCCAGGGCACACACAATATGGTGGTAAATAAATGTTTGCGGTCATCCAAGGACATAACCTTCCGAACCACCTCAACGGCTACCTCAGTCGCTTCTTTTCAGAAGTAGACGCAGGTCTTTATGTAGGAGTTCTATCCAGAGCCGTTATGGAAAACCTTTGGGAAAAATGCCAATCCATAGACCTAGCAGGATCCCTTACTCTGATTCACCCGCAATATGATGCTGAGCAAGGGTTCAGAATCCGCACAACAGGAAAACAACGGCGCCCCGTCGTTGATATTGATGGCCTTTTCCTCTCTGCTCGTGGTCTAATAGAAGACGTGCGTTTTGCTGACCCCCCTGGATGAAGCCGATGCAATTATTCCAGACGAAGTTTTGGAGGATTTTTGCCCGGAGAGTGAGTAAACGCGCAGGTTATTTAGT # Right flank : CTATATGTAAACGGGAAGGGGACGCACGTTAATTCCATCGCTATGGCTTATAATGTGGGAGGGCAGTTGACGAATGCCTGTGTCGATAAATTTGAGGTCACATATCGGGAGAATGGCCAAAGCAAGGCCATGACCTCGGGACATAATTGCGCGCTGTACCGTACCACCCATACTTTTCAGGTAAATAGGAATTTTGACCCTAATTCACGGGTCTGTGGACGAGCGCACGTGCAAGGTGCGGGTCCAGGAAACTGGGCTTGCATTACGATTAAGCCCTAGGAGGGTAGATGGTAGAATTTCTGACTATAATTGGCAGCTTTAGTATCGCTTTTCTGATCCCTACCTTACTTGTGATCATAATCGTGCTTTTTGTTCTGTCACTCAAGAAAAAGAAGTAAACCTTCTCCGTTTTGAATGTTGGTCAGCGCTATTTCGGTAGATGCCATCCAACATTCTTTTAGTTTTGAGCGTTTATCGACTGCTTGTTTCCCAGCCTATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 215389-215571 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUJ01000001.1 Corynebacterium ulcerans NCTC 12077 contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 215389 38 100.0 34 ...................................... AACGCGGATCGGGCGATTGATGTTCGCCTCGCAA 215461 38 100.0 35 ...................................... CCCCGCCTACTGGGTGAGGATGTGGTTCTCGCATG 215534 38 97.4 0 ....................................T. | ========== ====== ====== ====== ====================================== =================================== ================== 3 38 99.1 35 ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACAC # Left flank : ACTTTTTTAGCGAGAGCTTCGGCGTGGTCAGGCTGAAGCTGCCCTTTTAACTCGTTTAAGGGGACGGAGAGGGAGGCATAAGGGCTAGGTCGAAAAGAATAAGACCGCATGTCATCAGCGTATATTCGGATGGTTGTCCCCAAAATCTGAGATTCAAGGATAACGTTTCCGAATACTAAGGACGATAGTTTTTTCTCTTTCATATTGGGCAGTCTACGGAAATAAAGCAGTACTAGCTGCTGGCCCTAGGCGATGGACTGGATAGATCGTTCTGTGGCGTTGAACAATGCAAATGCGAGTCGTGTATCCGAAGTGCGTACATGCCCCGTAGGGGTGTGTGGTGACATTGAAAAATGAATGAGCGCCAGGCAGCTCCAACTACCTGACGCTCGCTTATCACCCAGTACCAGCTGGGGAGAAAGCACGGCTATGAGCCCGTGCCATTGCGCAGATCTCGAGCACCAGCGCGTCCGATGAGGACCGCGCAGCCCTACAGCGTC # Right flank : CCCATGGCGCGGTTGAAGGCGTTGAAGTCGAATGTTTTTTTTTTCGGCTTCGGTCGCAGCCTTTCATTGAGGTGGCGACTTCGACCGCAATTTCTTCCGCACCGAGGCAGGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTCTTCCTGCCAATTGGCACACGGTACAGGCAAGTCCATTGTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTCCACATGCGCGCCTTATCGCCCTTCTTACGGGGCATTTTTTTTTTTGAAAGGCTGCGACCGAAGCCGCAGCGACAGCCCCCTCATTTTAACTGACTTAACCTCGGTATTTGCCCTTTTATGGCGAAGTTCTCGACTTTTATGAAGTTATTTTCCAAAGGGGTGATTGTTGTTGCTCTATGAAAACCATAATGACAAGGGAAAACGTGACCGCGAAGACCTCCCGGGATTTTTAAAGTCCGCAGGGTCTTCGCGGTAGTTTCTTGCTGCTAGATAATCAGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.40,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 215615-215790 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUJ01000001.1 Corynebacterium ulcerans NCTC 12077 contig01, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 215615 29 100.0 44 ............................. GGCGACTTCGACCGCAATTTCTTCCGCACCGAGGCAGGTCGCTG 215688 29 100.0 45 ............................. CTTCCTGCCAATTGGCACACGGTACAGGCAAGTCCATTGTCGCTG 215762 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================= ================== 3 29 100.0 45 CGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : GCAGTACTAGCTGCTGGCCCTAGGCGATGGACTGGATAGATCGTTCTGTGGCGTTGAACAATGCAAATGCGAGTCGTGTATCCGAAGTGCGTACATGCCCCGTAGGGGTGTGTGGTGACATTGAAAAATGAATGAGCGCCAGGCAGCTCCAACTACCTGACGCTCGCTTATCACCCAGTACCAGCTGGGGAGAAAGCACGGCTATGAGCCCGTGCCATTGCGCAGATCTCGAGCACCAGCGCGTCCGATGAGGACCGCGCAGCCCTACAGCGTCACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACACAACGCGGATCGGGCGATTGATGTTCGCCTCGCAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACACCCCCGCCTACTGGGTGAGGATGTGGTTCTCGCATGACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACTCCCATGGCGCGGTTGAAGGCGTTGAAGTCGAATGTTTTTTTTTT # Right flank : TCCACATGCGCGCCTTATCGCCCTTCTTACGGGGCATTTTTTTTTTTGAAAGGCTGCGACCGAAGCCGCAGCGACAGCCCCCTCATTTTAACTGACTTAACCTCGGTATTTGCCCTTTTATGGCGAAGTTCTCGACTTTTATGAAGTTATTTTCCAAAGGGGTGATTGTTGTTGCTCTATGAAAACCATAATGACAAGGGAAAACGTGACCGCGAAGACCTCCCGGGATTTTTAAAGTCCGCAGGGTCTTCGCGGTAGTTTCTTGCTGCTAGATAATCAGAAATTCATTGTCAGTGATCTCTTGTTTTCTGCCTTCGTAAGTAAACGTGGTGTCTACCTTCGACAGCAGTCCAAGGTCGCAATATAAAACGGAATCTTCCTCAGCGTTAATAATGAGTTTTATTTCATCCTTTAGCCGAAGCAGCTTTGCAGGGCTGCAATCGACAACAAAAACGCTGTATTGGATCCTGTCGCCATATTTTTGCAAGGTCTTCGCTAGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 674835-673170 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUJ01000007.1 Corynebacterium ulcerans NCTC 12077 contig07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================== ================== 674834 28 100.0 33 ............................ ATCGCAAACCGGTAAGCGTCAGCGTGCAAGTCG 674773 28 100.0 39 ............................ AGGCGAGGCAAATCAAAACGCGGAATGACAAAAAAAAAA 674706 28 100.0 33 ............................ AAAACCCACCCACTACATAAGGATAAAGACATG 674645 28 100.0 33 ............................ CGACCCATATCAGCTCGATGCTGTTGGCAGCGG 674584 28 100.0 33 ............................ AATGAGGCGTCGAGTGCTGCGGCGGATGCTCAG 674523 28 100.0 33 ............................ GAGCGAATTCAGGTAATGGGAAGACTTGACGTG 674462 28 100.0 33 ............................ CAACGGCGCCCATCTTTAAGCACCACAGCGGTG 674401 28 100.0 33 ............................ CTGCCACGGCAAAAGATCAATACCGCAAATATG 674340 28 100.0 33 ............................ CCTCCGCTATCGCGGAGAAGGAGGCCACATCCG 674279 28 100.0 33 ............................ AAGCAGCCGACTGGTGGGCATGATGCCTACCCG 674218 28 100.0 33 ............................ CCGCTGCGTCCCTTTCCTACGCCTTTGCCGATG 674157 28 100.0 33 ............................ CCAACCCCGCCACCCCCGAAAGGCTGACGGGGT 674096 28 100.0 126 ............................ TCGGTTGCGAGGTTTCTGCGGTGCGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 673942 28 100.0 39 ............................ TCTGCAACCCCCACACCCACGCGGTGCTGAAAAAAAAAA 673875 28 100.0 33 ............................ CTACCCACGCCTTGACATTGCTAGACAAAGTGG 673814 28 100.0 41 ............................ CGTACACCTTGAACTTCACGACGTGCACAGAAAAAAAAAAA 673745 28 100.0 33 ............................ TCCCCCGCGTCGCATACAAGGGCAGTGCCCCGG 673684 28 100.0 33 ............................ ATGAAGCCTACGTCAATGGATATGTGGGGGCTG 673623 28 100.0 39 ............................ GATGTTAAAAAACCGCTCATAGCTAGGGAAAAAAAAAAA 673556 28 100.0 33 ............................ AACGTTATTAAAAAATTGCTACAAAACCGCTGG 673495 28 100.0 87 ............................ TTGCGGAGGCGGCGGGGTTGAGCAGCAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 673380 28 96.4 33 A........................... CGTCCTGGCTCGTGGGCTTTTCGAATGTGGTAG 673319 28 100.0 33 ............................ GCACATACCACGGCCTAGGGGTTACCCCCGTTG 673258 28 100.0 33 ............................ GGTTCGGTAGGGCGGTGATCTTGGCTCGTGATG 673197 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================================================== ================== 25 28 99.9 40 GAACTACCTCCGCATACGCGGAGAAAAG # Left flank : TTCGTGATTCGCACACCGGGCTTCATCTTGATAATGAGGTTCCCGTCTTCTGGAGACCTCGGGACGTACATAAACCCGCCTGTATTCGACAAACCTTTTACAGGTGGGTAGGACTCGTCGTAGTCGATAACTTGATTGAATCGAACAAGTTTTCGATACATGCCGAGCAGTTTAACATAACTTGAACCACGTACCCCCTCTTGTCCCCGTTCCATATAGCGGGCGTGGATTCGTAGCGTTTTATAGATTGTGTTATCGCGGTGCTTATCTTTAACTTTTGGCCAAGGTATGTCATCTTTGATGTATTCCATTTCCCTAGCTTCATGCCCTCCTCTTTTTGCAAGAGTGAAGATGTATTGACGGGTAACCCCGTATTCCCTAGCAATCTGGGATTGGGTCATACCTTCACCTAAAAGCTGCATAACCCGTTCTGGCGTGATAGACATTTATACCTCCGTAGTGGTGGACACAAACTATATATCTAGCAAGTGTCAAGCTAT # Right flank : ACTAACTTACCTGCGCGTTTACTCGCCAAAGAAGTCAAAAACAGTCCAAACTGCGTCTGGAATCAGCACATTAACTCCATACAATCGGTGAGAAAACTAGCCTCCCTTATTAGACCATGACAAAAGTGGGAAAGACTATTGCATACCCCCGCAATATCCAAGGGAAGGCATAGAACCACAAGGTCGAAAGATAAGGCGATTCGATCCGTAGGAAGAGGATAAAGTGCGCATCCGTTGATGCGGAGCCCGTCATTCCTAAATAGGGGAGTACTGGGAGGAATCGAGGTGCGTCGTGCAACAATAGATCGGTGATTGAACTGGACCAGCCTCAAGTAACTGTTAGCCTTCGCCCAGAGCTGACCCCGGCTGTTATTACTATTTCAGGCCAGGATCGACAGGGAGTGTCGGCAGCAGCTTTCCGTGTGTTAGCTGCCAACGGTGTGCAGATCCTTGATGTTGAGCAGTCGCAGTTTCGAGGGTTTCTGGGGTTGGCGGTGTTC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //