Array 1 31699-34072 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQL01000294.1 Serratia marcescens strain 1054 NODE_369_length_51866_cov_21.535418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31699 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 31759 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 31819 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 31879 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 31939 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 31999 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 32059 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 32119 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 32179 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 32239 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 32299 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 32360 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 32420 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 32480 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 32540 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 32600 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 32660 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 32720 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 32780 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 32840 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 32900 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 32961 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 33021 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 33081 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 33141 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 33201 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 33261 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 33321 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 33381 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 33441 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 33501 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 33561 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 33622 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 33682 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 33742 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 33802 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 33862 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 33922 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 33982 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 34042 28 96.4 0 ....................A....... | A,A,G [34062,34065,34068] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 42922-46958 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQL01000294.1 Serratia marcescens strain 1054 NODE_369_length_51866_cov_21.535418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42922 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 42982 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 43042 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 43102 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 43162 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 43222 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 43282 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 43342 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 43402 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 43462 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 43522 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 43582 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 43642 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 43702 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 43762 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 43822 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 43882 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 43942 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 44002 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 44062 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 44122 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 44182 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 44242 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 44302 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 44363 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 44423 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 44483 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 44543 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 44603 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 44663 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 44724 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 44784 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 44844 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [44891] 44891 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [44896] 44952 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 45012 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 45072 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 45132 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 45192 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 45252 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 45312 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 45372 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 45432 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 45492 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 45552 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 45612 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 45672 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 45732 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 45792 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 45852 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 45912 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 45972 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 46032 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 46092 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 46152 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 46212 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 46272 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 46332 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 46392 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 46452 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 46512 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 46572 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 46632 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 46692 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 46752 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 46812 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 46872 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 46932 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //