Array 1 1014864-1012578 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR584267.1 Lawsonella clevelandensis isolate USB-603019 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1014863 29 100.0 32 ............................. GCGAGAAGGGGGATGCAGGGCCGAAGGGGGAG 1014802 29 96.6 32 ............................T CGACTTAAGGATTGCTGATTCTGACTTTAATC 1014741 29 100.0 32 ............................. CATTCGATCTTAAACAAGAGGATGAGTCAGCC 1014680 29 100.0 32 ............................. TGGCCGTAACGAATGGTATCGCCTGTCACATC 1014619 29 96.6 32 ............................T CAATAGAGAGGTAGATGTGGTGCCACCTACCA 1014558 29 100.0 32 ............................. TACCGGGCACGCTAAGAAAGGAAAAAACATGG 1014497 29 96.6 32 ............................C GTGGTCTGGCAAGGTGGTTTCCGGGAAGCTCC 1014436 29 100.0 32 ............................. GACTTTGAGCTGCCTATTGTTGTTAACCCGTA 1014375 29 100.0 32 ............................. CTCCGCAAACGGCTTATAATCACGCTTCATCT 1014314 29 100.0 32 ............................. TAGCCCTGCCCTGTCTCAGTACTAGAGAGTGT 1014253 29 96.6 32 ............................T GATAGGGTTGCGGGCACTACACGCTACCTGGA 1014192 29 100.0 32 ............................. GACTGGACGTTGCTGTGGGCGCCATCGCGGTA 1014131 29 100.0 32 ............................. CCATGCTTTGACGTCACTGTGTCGAATGTCTG 1014070 29 96.6 32 ............................T CAGTGCTGCTAGAAACACTCACGGAATCGGCA 1014009 29 96.6 32 ............................C GCAGCTGACGTGACAGACATCAAAGCGGCTAC 1013948 29 96.6 32 ............................C TGTGACCGACCCCACATAGTTAGTGCCGTCGA 1013887 29 100.0 32 ............................. GACTTTGAGCTGCCTATTGTTGTTAACCCGTA 1013826 29 100.0 32 ............................. CTCCGCAAACGGCTTATAATCACGCTTCATCT 1013765 29 100.0 32 ............................. TAGCCCTGCCCTGTCTCAGTACTAGAGAGTGT 1013704 29 96.6 32 ............................T GATAGGGTTGCGGGCACTACACGCTACCTGGA 1013643 29 100.0 32 ............................. GACTGGACGTTGCTGTGGGCGCCATCGCGGTA 1013582 29 100.0 32 ............................. CCATGCTTTGACGTCACTGTGTCGAATGTCTG 1013521 29 96.6 32 ............................T CAGTGCTGCTAGAAACACTCACGGAATCGGCA 1013460 29 96.6 32 ............................C GCAGCTGACGTGACAGACATCAAAGCGGCTAC 1013399 29 96.6 32 ............................C TGTGACCGACCCCACATAGTTAGTGCCGTCGA 1013338 29 100.0 32 ............................. ACTGACCCTGGTAAAGCTGGGTATGCTGCTAC 1013277 29 96.6 32 ............................T CAGACCGACAATCACGCCCATAGCGGTGCGTG 1013216 29 96.6 32 ............................C CCAGTACCGAGCGGGTCAGCAGCTCCCATCAG 1013155 29 96.6 32 ............................C AATCGTGTGGAGCTGCTGGGTTCGCTGTTGGA 1013094 29 100.0 32 ............................. TATAACATGTCGGACGAACCGACACAAGCTAG 1013033 29 96.6 32 ............................C CAGGCCGCGCTGTGGTCGTCTTTGGCTGTGGC 1012972 29 100.0 32 ............................. GTGGGGATATTCGCGTTCAGCGTGTCCACACC 1012911 29 100.0 32 ............................. ACGACTACAGCGAACCGGACAGCGGCTACGAC 1012850 29 100.0 32 ............................. GGATGCTCGCCGGTGTCACCCGCCGCCTAAAC 1012789 29 96.6 32 ............................C TGTGTGGCTGCTGATTCGAGAGTGTTGGCCTT 1012728 29 96.6 32 ............................C AGGCATGGGTATTAAGATGACGCTTGCGGGGA 1012667 29 96.6 32 ............................C TCTTGCGTATCATCGTCGAAGCTGACTTCCAG 1012606 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 98.4 32 ATGTGCCCCGCGCCAGCGGGGATGAGCCG # Left flank : CAGATTGTGGAGACCTGTTTTTATGGGATGAACTTCAAGTTGTTCCAGCTGGCGTAAATTATGAGGAACAGACAGCATCATGATGGTACTTGTCATAACCGCGTGTCCCGCTGGGTTGCGAGGTGACCTCACAAAATGGGTACTGGAAATAGCCCCTGGTGTTTTCGTAGGAAATCCTGGTGGAAGAATTCGGGATTTACTCTGGGAACGAACCACTCAACTGTGTCGAGATGGAAGGGCATTGTTGGTCTTTTCCACGAATAATGAGCAGCACATGGAATTCCGCACTCACAATCATGATTGGATCCCTACTGATTTTGATGGCATTACTCTCATGATGCGGCCTGATAATAAGACTACCAATAACAGGCCTCGTAATGGATGGGCTACTGCTCGGCGTCTTCGCAAGTACCGGTAAGTAAGATAAGAATATCCGTGTCGCTTATTCTGAGTTAAATGTAAAATGAGCACTGTCTTGCTGTAAATGCAGATCATCAAGC # Right flank : GATGAGTATTTGGGGCGAAATATGGCTTTCGAGTCTCCCGATGGGCAAAAGTTCGAAGTGCAGATTCACACTAAAGATAGCCTGGAAGCCGCTGAAAAGACCCATCCCCTCTACCAGAATAAGCGAGCTGACGATACCCCTCAACTAGAGCGTGATCGTTTGCAAGTAGAGATGAACAAGGTATTTTGCAAAGTACCGATTCCGCCTAACACAGTTTGGAGCGACTCGTGACACGTGATCGTTATTTCGTAGATGCTGATCTCCAAATGAGGTCTATTGCGATTATTAAATATGATGCAGATCTTGATATGTGGATGGTGTATAGCGGTCTGAGGCGAAAATGGGTTATTCCAGAAAATGCGCAGTGGCACTTAATGACGAGAGCTCGTTATTCAGGCGATTATGAGCCCATTCCCGTAGAAGAGTTGCCGAAGTACACGAATGCTCTCGACGAAAAGTTTAAGGACCGTAGACAGTAGTCTTTTATAAGTCTTTACCCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTGCCCCGCGCCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //