Array 1 122135-119706 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDZ01000005.1 Pasteurella multocida subsp. septica strain CIRMBP-0812 NODE_5_length_137994_cov_336.18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 122134 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 122074 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 122014 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 121954 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 121894 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 121834 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 121774 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 121714 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 121654 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 121594 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 121534 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 121474 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 121414 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 121354 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 121294 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 121234 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 121174 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 121113 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 121053 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 120993 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 120933 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 120873 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 120813 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 120753 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 120693 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 120633 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 120573 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 120513 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 120453 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 120393 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 120333 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 120273 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 120213 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 120153 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 120093 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 120033 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 119973 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 119913 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 119853 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 119793 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 119733 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 183115-184402 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDZ01000001.1 Pasteurella multocida subsp. septica strain CIRMBP-0812 NODE_1_length_689703_cov_400.814, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183115 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 183175 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 183235 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 183295 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 183355 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 183415 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 183475 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 183535 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 183595 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 183655 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 183715 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 183775 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 183835 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 183895 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 183955 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 184015 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 184075 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 184135 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 184195 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 184255 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 184315 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 184375 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACAGTTAACTGCCGTGTAGGCAGCTTAGAAAGCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGAGTTAACTGCCGTATAGGCAGTTTCAATTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45561-45327 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDZ01000003.1 Pasteurella multocida subsp. septica strain CIRMBP-0812 NODE_3_length_333581_cov_394.585, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45560 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 45494 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 45428 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 45362 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //