Array 1 5789-7659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGE01000254.1 Xanthomonas oryzae pv. oryzae strain IXO278 contig_254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5789 31 100.0 34 ............................... CAGTCCACGCACTAGCTCGGCACGGGTCGCATCG 5854 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 5920 31 100.0 34 ............................... ATCTACTCTATGCCCTGAGGGACAAGAAGAACCA 5985 31 100.0 35 ............................... AATACAGGTTGGGACATATGCCAGTATCTTTACCA 6051 31 100.0 35 ............................... CTGTGGGACACGGCGGATATGGAGATGTGGGAAAG 6117 31 100.0 35 ............................... TTGTCATACACCCTCAGCGTCCCTGCACTGTACTC 6183 31 100.0 37 ............................... TGCAAGAGTTGATCAAGTCTGCAACTGATTGGCACAC 6251 31 100.0 36 ............................... TTACCAAGCGCCCTTACAATAGTCAGAGTTTGATCC 6318 31 100.0 36 ............................... TGCATTATGGTCAGTGGCCCACCAAGCAGCTAGACC 6385 31 100.0 35 ............................... TGCTGCATGCTTAGCAGTTGTAATTCCCTCTGCCT 6451 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 6518 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 6583 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 6647 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 6712 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 6777 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 6843 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 6909 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 6974 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 7039 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 7105 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 7171 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 7235 31 96.8 36 .............A................. ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 7302 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 7367 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 7432 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 7499 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 7564 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 7629 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 29 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //